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The map label for this gene is ywqA [H]

Identifier: 213692059

GI number: 213692059

Start: 1361851

End: 1363245

Strand: Direct

Name: ywqA [H]

Synonym: Blon_1177

Alternate gene names: 213692059

Gene position: 1361851-1363245 (Clockwise)

Preceding gene: 213692056

Following gene: 213692061

Centisome position: 48.08

GC content: 66.52

Gene sequence:

>1395_bases
ATGGAAACCCCATTGCACGACTACCAGAAACAGGCCATCCGGTTCGCCCTGAAGGCGTTCGCCTCCCCGTCCCGCGGCTG
CGGCCTGTTCCTCGAACCCGGGCTCGGCAAGACGCTGACCAGCATCGCCGTCATGGACATCATGCACGCGGCCGACCCGC
ACGCCCGGTTCCTCGTCATAGCGCCCGCATTGGTGGCCCGCAACTCGTGGCCCGACGAGCTCGAACGCTGGAAGGGCATG
CACTCCCTGACATGGGCGGCCGCCGTCGGCACGCCGCGGCAACGGTCGAAGGCGCTGGACGCCGACGCGGACGTGACCGT
CATCGGGCAGGACAACCTCAAATGGCTGGACGGGAAGGTGGGGGACTGGCCGTGGAAGGGCATCGTCGTCGACGAGCTGT
CCGGCTACAAGACGCCGAGAAGCAACCGGGGACTCATCCTGCGCCGGCACGCGAGACAGGCGAAATGGACGCTCGGCCTG
ACCGGCACGCCCGCCACCAAAAACCTATTGGACCTGTGGGGCGAGATCGCGGTCATCGACCGGTCCGAAACGTTGGAACG
GTCCATGACCCGCTACCGGGACCGCTGGTTCACGCCCGGACGCTACATCGACATGGGCGGCCGCCGGCAGCCCATCGACT
ACACGCCCCGCGACGGCGCCCAACAGGAGATCCTGGACCTCATCGAACCGTTCTGCCTGAGCATGAAGGCGTCCGACAGG
CTGCCCGGGCTCCCGTCCATGATCGAGACCGACCATTGGCTCGACATGCCGAAACCGACCCGGGACACGTACGACCGGCT
GCGTCGGCAGATGGTCGCCGACCTGGATGACGGGACGACCGTGACCGCCGCCAACGCGGGCGTGCTCACCGCGAAGCTCG
CCCAACTGACGTGCGGATGCCTGTACCCGGACGCGGACGATCCGGAAGGGACGATCCGGCACGTGGACGACGTGAAGCTC
GACGCGCTCGCGGACATCATAGGCGCGGCGGACGGGCCGGTGCTCGTGTTCTACCAGTTCACCGACGAACTGGAACGCAT
GCGCGCACGCTTCCCCGGCATGCGCGAGGTGCACGAGCAAGGCGTGCTGGAGGAATGGCGCAACGGCCGCGTCCCGCTCC
TGGCCGCCCACCCGCAGGCCGCGAAATACGGGCTGAACATCCAGGACGGGGGGCATGAGATCGTGTGGACCAGCCTGCCC
TGGTCGTTCGACGACTACCGTCAGGCATGCGACCGATTGCACCGGCAAGGGCAGAAAAGGACGGTACGCGTCCACCGGTT
ATTGGAGTCGAACACCGTGGACCGTCGCAAGCTCGACGTATTGACCGGCCGCATGATGCTGCACGAGGCGGTCATGGACG
CAGTGGAAGGAGAGACGACGGGCATCAATATTTGA

Upstream 100 bases:

>100_bases
ATACCAGGCCACGACGGAATCAAACATGACGGAACCCCTTTCCGGACATCCTTCACCGAACCCGTCATATGCGTCCCGGC
TCTGACGCATACGCGCGTGC

Downstream 100 bases:

>100_bases
TATGCGAATCAAGCAGGGAGACCAGTCCGGGCGGGATCGCGGCGAACATGTCCGGAACACACACGGAATCGACCATCGCG
CGAAGCGATGGTATATCCAT

Product: SNF2-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
METPLHDYQKQAIRFALKAFASPSRGCGLFLEPGLGKTLTSIAVMDIMHAADPHARFLVIAPALVARNSWPDELERWKGM
HSLTWAAAVGTPRQRSKALDADADVTVIGQDNLKWLDGKVGDWPWKGIVVDELSGYKTPRSNRGLILRRHARQAKWTLGL
TGTPATKNLLDLWGEIAVIDRSETLERSMTRYRDRWFTPGRYIDMGGRRQPIDYTPRDGAQQEILDLIEPFCLSMKASDR
LPGLPSMIETDHWLDMPKPTRDTYDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKL
DALADIIGAADGPVLVFYQFTDELERMRARFPGMREVHEQGVLEEWRNGRVPLLAAHPQAAKYGLNIQDGGHEIVWTSLP
WSFDDYRQACDRLHRQGQKRTVRVHRLLESNTVDRRKLDVLTGRMMLHEAVMDAVEGETTGINI

Sequences:

>Translated_464_residues
METPLHDYQKQAIRFALKAFASPSRGCGLFLEPGLGKTLTSIAVMDIMHAADPHARFLVIAPALVARNSWPDELERWKGM
HSLTWAAAVGTPRQRSKALDADADVTVIGQDNLKWLDGKVGDWPWKGIVVDELSGYKTPRSNRGLILRRHARQAKWTLGL
TGTPATKNLLDLWGEIAVIDRSETLERSMTRYRDRWFTPGRYIDMGGRRQPIDYTPRDGAQQEILDLIEPFCLSMKASDR
LPGLPSMIETDHWLDMPKPTRDTYDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKL
DALADIIGAADGPVLVFYQFTDELERMRARFPGMREVHEQGVLEEWRNGRVPLLAAHPQAAKYGLNIQDGGHEIVWTSLP
WSFDDYRQACDRLHRQGQKRTVRVHRLLESNTVDRRKLDVLTGRMMLHEAVMDAVEGETTGINI
>Mature_464_residues
METPLHDYQKQAIRFALKAFASPSRGCGLFLEPGLGKTLTSIAVMDIMHAADPHARFLVIAPALVARNSWPDELERWKGM
HSLTWAAAVGTPRQRSKALDADADVTVIGQDNLKWLDGKVGDWPWKGIVVDELSGYKTPRSNRGLILRRHARQAKWTLGL
TGTPATKNLLDLWGEIAVIDRSETLERSMTRYRDRWFTPGRYIDMGGRRQPIDYTPRDGAQQEILDLIEPFCLSMKASDR
LPGLPSMIETDHWLDMPKPTRDTYDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKL
DALADIIGAADGPVLVFYQFTDELERMRARFPGMREVHEQGVLEEWRNGRVPLLAAHPQAAKYGLNIQDGGHEIVWTSLP
WSFDDYRQACDRLHRQGQKRTVRVHRLLESNTVDRRKLDVLTGRMMLHEAVMDAVEGETTGINI

Specific function: Unknown

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI21071058, Length=486, Percent_Identity=24.6913580246914, Blast_Score=86, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI25144179, Length=460, Percent_Identity=24.3478260869565, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6324864, Length=480, Percent_Identity=23.9583333333333, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6322065, Length=476, Percent_Identity=23.7394957983193, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR022138
- InterPro:   IPR000330 [H]

Pfam domain/function: PF12419 DUF3670; PF00271 Helicase_C; PF00176 SNF2_N [H]

EC number: NA

Molecular weight: Translated: 52277; Mature: 52277

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METPLHDYQKQAIRFALKAFASPSRGCGLFLEPGLGKTLTSIAVMDIMHAADPHARFLVI
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
APALVARNSWPDELERWKGMHSLTWAAAVGTPRQRSKALDADADVTVIGQDNLKWLDGKV
ECHHHHCCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEEECCCCEEECCCC
GDWPWKGIVVDELSGYKTPRSNRGLILRRHARQAKWTLGLTGTPATKNLLDLWGEIAVID
CCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHCCCEEEEE
RSETLERSMTRYRDRWFTPGRYIDMGGRRQPIDYTPRDGAQQEILDLIEPFCLSMKASDR
CHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
LPGLPSMIETDHWLDMPKPTRDTYDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGC
CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHC
LYPDADDPEGTIRHVDDVKLDALADIIGAADGPVLVFYQFTDELERMRARFPGMREVHEQ
CCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHH
GVLEEWRNGRVPLLAAHPQAAKYGLNIQDGGHEIVWTSLPWSFDDYRQACDRLHRQGQKR
HHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHH
TVRVHRLLESNTVDRRKLDVLTGRMMLHEAVMDAVEGETTGINI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
METPLHDYQKQAIRFALKAFASPSRGCGLFLEPGLGKTLTSIAVMDIMHAADPHARFLVI
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
APALVARNSWPDELERWKGMHSLTWAAAVGTPRQRSKALDADADVTVIGQDNLKWLDGKV
ECHHHHCCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEEECCCCEEECCCC
GDWPWKGIVVDELSGYKTPRSNRGLILRRHARQAKWTLGLTGTPATKNLLDLWGEIAVID
CCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHCCCEEEEE
RSETLERSMTRYRDRWFTPGRYIDMGGRRQPIDYTPRDGAQQEILDLIEPFCLSMKASDR
CHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
LPGLPSMIETDHWLDMPKPTRDTYDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGC
CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHC
LYPDADDPEGTIRHVDDVKLDALADIIGAADGPVLVFYQFTDELERMRARFPGMREVHEQ
CCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHH
GVLEEWRNGRVPLLAAHPQAAKYGLNIQDGGHEIVWTSLPWSFDDYRQACDRLHRQGQKR
HHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHH
TVRVHRLLESNTVDRRKLDVLTGRMMLHEAVMDAVEGETTGINI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9353933 [H]