| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691903
Identifier: 213691903
GI number: 213691903
Start: 1202726
End: 1203697
Strand: Direct
Name: 213691903
Synonym: Blon_1015
Alternate gene names: NA
Gene position: 1202726-1203697 (Clockwise)
Preceding gene: 213691902
Following gene: 213691904
Centisome position: 42.46
GC content: 59.57
Gene sequence:
>972_bases ATGGCGAAAACAGCAGCGAATGCACCGGTAACCGTGGTGCCCGGAGGCGACTCGTATTTGAACGACGCGCGCACCAAGGC ACTGTGCGCGCAGGCGTTGAAGGCGCGGCCCGACGCCGACCTCATCGAACTCGACGCCACATCGGCCGACCAGTATGCCT TCGATGAAGCCGTCAGCCCATCGTTGCTTTCCGACGTTGCCGTGGTCAAACTCGTCAACCTGCAGAATGCCGACGACAAG CTCGCCGAAGCTCTGGTGGCGTACACCAAGCAGGCCGCCAAGGATCCGAACGGCTCCAGCGTGGTGATCTGCCAGCACGA GGGCGGCGTCAAAGGGCGCAAAATCATCGACCAACTGGTGAAAGCCGGCGCTCGCAAAGAGGACGTGCCGGATTTGAAGA AACCGGATGCACAGCTCAATTTCGTGCTCGGAGAATTCGAGAAACGTGGTCGTAGAGCCGAACCGATGGCCGCACAGCAG CTGGTATCCGTACTCGGCGGCAAAACCGGCGAACTCGCCGCCATGTGCGAGCAACTGTGTTTCGACTTTGACGATAATCC GATGGGCCTCGACCGTGTCAACCAGTATTTGACCGCCAATCCGCAGGTCACCGGTTTTGCCGTGGCAGACAAGGCCGTGG AAGGCAAAACCGCAGAAGCCATCGTCATGATGCGTGCAGCTGTGGAACAAGGGACCGATCCCATCGCGCTGATCGGCGCG TTGGCCATGAAGCTCCGTACCATTGCCAAAGCCTCGGCGGTACGGGCCGGCACGATTTCCCAGGCCGAAGCGAAAACCAA TCCGTGGGTGCTGAAGAATGCGATGCGCCAACTTGGCGGCTGGACTTCGGCAGGACTCGCGCATTGCATCCGTATGCTCG CCTGGGCGGATGAGCAAAGCAAAACAAACGGTGGCGACCCGGTATATGCGCTGGAACGCTGCATTGAAGACATCAGTCAT AAAGGTCGGTAA
Upstream 100 bases:
>100_bases GCAACCATCGCAATCCCAGCCGAATACCACTATCTTGACGGCAGCGGCAAAATCGTGATGCCGGCAGGTCATTGTCCAAC CTGTGTGGCGAGATGGGGGC
Downstream 100 bases:
>100_bases AAGTCGATAAAGGAGTATTTATGAGCGAACACACTATTGCGGCTCCCACCAGCGAGGCCATGCAGGAGCTCGGCCGTCGT GTGGCCGGAATGGTACACGG
Product: DNA polymerase III, delta subunit
Products: diphosphate; DNAn+1
Alternate protein names: DNA Polymerase III Subunit Delta; DNA Polymerase III Delta; DNA Polymerase III; DNA-Directed DNA Polymerase III Subunit Delta; DNA Polymerase III Delta Subunit HolA; DNA Polymerase III Subunit Delta-Like Protein; LOW QUALITY PROTEIN DNA Polymerase III Delta Subunit
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MAKTAANAPVTVVPGGDSYLNDARTKALCAQALKARPDADLIELDATSADQYAFDEAVSPSLLSDVAVVKLVNLQNADDK LAEALVAYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVPDLKKPDAQLNFVLGEFEKRGRRAEPMAAQQ LVSVLGGKTGELAAMCEQLCFDFDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGA LAMKLRTIAKASAVRAGTISQAEAKTNPWVLKNAMRQLGGWTSAGLAHCIRMLAWADEQSKTNGGDPVYALERCIEDISH KGR
Sequences:
>Translated_323_residues MAKTAANAPVTVVPGGDSYLNDARTKALCAQALKARPDADLIELDATSADQYAFDEAVSPSLLSDVAVVKLVNLQNADDK LAEALVAYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVPDLKKPDAQLNFVLGEFEKRGRRAEPMAAQQ LVSVLGGKTGELAAMCEQLCFDFDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGA LAMKLRTIAKASAVRAGTISQAEAKTNPWVLKNAMRQLGGWTSAGLAHCIRMLAWADEQSKTNGGDPVYALERCIEDISH KGR >Mature_322_residues AKTAANAPVTVVPGGDSYLNDARTKALCAQALKARPDADLIELDATSADQYAFDEAVSPSLLSDVAVVKLVNLQNADDKL AEALVAYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLVKAGARKEDVPDLKKPDAQLNFVLGEFEKRGRRAEPMAAQQL VSVLGGKTGELAAMCEQLCFDFDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGAL AMKLRTIAKASAVRAGTISQAEAKTNPWVLKNAMRQLGGWTSAGLAHCIRMLAWADEQSKTNGGDPVYALERCIEDISHK GR
Specific function: Unknown
COG id: COG1466
COG function: function code L; DNA polymerase III, delta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 34348; Mature: 34216
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTAANAPVTVVPGGDSYLNDARTKALCAQALKARPDADLIELDATSADQYAFDEAVSP CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCH SLLSDVAVVKLVNLQNADDKLAEALVAYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH KAGARKEDVPDLKKPDAQLNFVLGEFEKRGRRAEPMAAQQLVSVLGGKTGELAAMCEQLC HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH FDFDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGA CCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH LAMKLRTIAKASAVRAGTISQAEAKTNPWVLKNAMRQLGGWTSAGLAHCIRMLAWADEQS HHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHC KTNGGDPVYALERCIEDISHKGR CCCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure AKTAANAPVTVVPGGDSYLNDARTKALCAQALKARPDADLIELDATSADQYAFDEAVSP CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCH SLLSDVAVVKLVNLQNADDKLAEALVAYTKQAAKDPNGSSVVICQHEGGVKGRKIIDQLV HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH KAGARKEDVPDLKKPDAQLNFVLGEFEKRGRRAEPMAAQQLVSVLGGKTGELAAMCEQLC HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH FDFDDNPMGLDRVNQYLTANPQVTGFAVADKAVEGKTAEAIVMMRAAVEQGTDPIALIGA CCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH LAMKLRTIAKASAVRAGTISQAEAKTNPWVLKNAMRQLGGWTSAGLAHCIRMLAWADEQS HHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHC KTNGGDPVYALERCIEDISHKGR CCCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA