| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
Click here to switch to the map view.
The map label for this gene is gsiC [H]
Identifier: 213691815
GI number: 213691815
Start: 1089575
End: 1090501
Strand: Direct
Name: gsiC [H]
Synonym: Blon_0923
Alternate gene names: 213691815
Gene position: 1089575-1090501 (Clockwise)
Preceding gene: 213691814
Following gene: 213691816
Centisome position: 38.46
GC content: 58.58
Gene sequence:
>927_bases ATGGGTAAGTATCTTCTGCGACGCATTCTGCAGATGATCCCCGTGGTTCTCGGTACGACACTTCTGGTCTATGCCCTTGT CTTCGCCCTGCCGGGCGACCCCGTCAAGGCCATGTTCGGAGACAAGCCCGTCAATGAGGCCGTCGCAGCCCAGATCCGCG CAGAATACCATCTCGACCAGCCGTTCATCGTTCAGTACTTCATCTACCTGAAGAATGCACTGACCCTGAACTTCGGCGAT ACCTTCGCCGGACAGCCTGTTCTCGACGAAATCGCCCGCGCCTTCCCGGTCACCATCCGGCTCGGCCTGATGGCGTTCGT GTTCGAGGCGATCTTCGGCGTGGTCTTCGGCATCATCTCGGGCCTCAAGAAGGGCAAGTGGTACGACACCGTCATCCTGA TCGTCTCCCTGCTGCTTATTTCCGTGCCGACCTTCGTCACCGGCTTCGTCATGCAGTATGTCTTTGGTATTCAGTGGACG ATATTGCCGGTGACGGCAGGCGCAGACCCGGGCTTCATCGACCTGCTCATGCCGGCCATGGTGCTCGGATCGGTGTCGAT GGCCTACATCATTCGATTGACTCGCTCCGAAATCTCCTCCAACATCGCCGAGGATTACGTGCGCACCGCACGTGCCAAAG GTATGTCGAACGGTCAGGTCATGCTGCGCCACGTACTGCGCAACTCCCTGATTCCGGTCGTCACCTACCTTGGTCAGGAC ATCGGCGCCCTGATGGGTGGTGCCATGATCACCGAGCAGATCTTCAACATCCACGGCATCGGCTTCCTCACCTACCAGTC CATTCTGAAGGGCGAGGCTAACCTGGTGGTGTCCATCGTCACGTTGCTCATGCTGATCTTCGTGGTGTGCAACCTCGTCG TCGACCTGCTGTACGCGGCCCTCGATCCGCGTATCCGTTACGCGTGA
Upstream 100 bases:
>100_bases TATCACAGTCCGGGCATGCGGTAAACTGTCGGAGTATTTATCGACCGGCGGGGGCGTACTATACCCTTTCTGGCCGGTCT AGGAAATAAGGAGCAACCGT
Downstream 100 bases:
>100_bases GCCGGGAGGAGTGAGCGATAATGGCAAACGAAACCACTGAGAACGAACTCAACGAGACCGGCGAACCGGGAACCGAATAC TTCATGGAAACCCTGCCTGG
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MGKYLLRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGDKPVNEAVAAQIRAEYHLDQPFIVQYFIYLKNALTLNFGD TFAGQPVLDEIARAFPVTIRLGLMAFVFEAIFGVVFGIISGLKKGKWYDTVILIVSLLLISVPTFVTGFVMQYVFGIQWT ILPVTAGADPGFIDLLMPAMVLGSVSMAYIIRLTRSEISSNIAEDYVRTARAKGMSNGQVMLRHVLRNSLIPVVTYLGQD IGALMGGAMITEQIFNIHGIGFLTYQSILKGEANLVVSIVTLLMLIFVVCNLVVDLLYAALDPRIRYA
Sequences:
>Translated_308_residues MGKYLLRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGDKPVNEAVAAQIRAEYHLDQPFIVQYFIYLKNALTLNFGD TFAGQPVLDEIARAFPVTIRLGLMAFVFEAIFGVVFGIISGLKKGKWYDTVILIVSLLLISVPTFVTGFVMQYVFGIQWT ILPVTAGADPGFIDLLMPAMVLGSVSMAYIIRLTRSEISSNIAEDYVRTARAKGMSNGQVMLRHVLRNSLIPVVTYLGQD IGALMGGAMITEQIFNIHGIGFLTYQSILKGEANLVVSIVTLLMLIFVVCNLVVDLLYAALDPRIRYA >Mature_307_residues GKYLLRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGDKPVNEAVAAQIRAEYHLDQPFIVQYFIYLKNALTLNFGDT FAGQPVLDEIARAFPVTIRLGLMAFVFEAIFGVVFGIISGLKKGKWYDTVILIVSLLLISVPTFVTGFVMQYVFGIQWTI LPVTAGADPGFIDLLMPAMVLGSVSMAYIIRLTRSEISSNIAEDYVRTARAKGMSNGQVMLRHVLRNSLIPVVTYLGQDI GALMGGAMITEQIFNIHGIGFLTYQSILKGEANLVVSIVTLLMLIFVVCNLVVDLLYAALDPRIRYA
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=37.3376623376623, Blast_Score=205, Evalue=2e-54, Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=33.2344213649852, Blast_Score=200, Evalue=8e-53, Organism=Escherichia coli, GI1787497, Length=310, Percent_Identity=33.2258064516129, Blast_Score=176, Evalue=1e-45, Organism=Escherichia coli, GI1789888, Length=309, Percent_Identity=33.9805825242718, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=31.306990881459, Blast_Score=131, Evalue=6e-32, Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=26.1194029850746, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=24.7933884297521, Blast_Score=102, Evalue=3e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 33907; Mature: 33776
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKYLLRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGDKPVNEAVAAQIRAEYHLDQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCC PFIVQYFIYLKNALTLNFGDTFAGQPVLDEIARAFPVTIRLGLMAFVFEAIFGVVFGIIS HHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLKKGKWYDTVILIVSLLLISVPTFVTGFVMQYVFGIQWTILPVTAGADPGFIDLLMPAM HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHH VLGSVSMAYIIRLTRSEISSNIAEDYVRTARAKGMSNGQVMLRHVLRNSLIPVVTYLGQD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH IGALMGGAMITEQIFNIHGIGFLTYQSILKGEANLVVSIVTLLMLIFVVCNLVVDLLYAA HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDPRIRYA HCCCCCCC >Mature Secondary Structure GKYLLRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGDKPVNEAVAAQIRAEYHLDQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCC PFIVQYFIYLKNALTLNFGDTFAGQPVLDEIARAFPVTIRLGLMAFVFEAIFGVVFGIIS HHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLKKGKWYDTVILIVSLLLISVPTFVTGFVMQYVFGIQWTILPVTAGADPGFIDLLMPAM HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHH VLGSVSMAYIIRLTRSEISSNIAEDYVRTARAKGMSNGQVMLRHVLRNSLIPVVTYLGQD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH IGALMGGAMITEQIFNIHGIGFLTYQSILKGEANLVVSIVTLLMLIFVVCNLVVDLLYAA HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDPRIRYA HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]