| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is yebQ [C]
Identifier: 213691468
GI number: 213691468
Start: 639734
End: 641500
Strand: Direct
Name: yebQ [C]
Synonym: Blon_0564
Alternate gene names: 213691468
Gene position: 639734-641500 (Clockwise)
Preceding gene: 213691466
Following gene: 213691469
Centisome position: 22.58
GC content: 65.03
Gene sequence:
>1767_bases ATGGACTGTTCATCACGATCCCAACGTCAGACTCAAGTCGATGCGTCCCCGACATCCCCGACATCTTCAACAACTATGAC ATCTTCAACGAATCCGACGGCCTCGTCGCCGCTGCCCACCCAGGCGCCGCCGTGGGGCGCGCTGTGGGTGATGGCCCTGG GATTGGCCATGATCGTGCTCGACAGCTCGATCGTCAACGTCTCCATCCCCACCATCATCGATGATATCGGCATTAACCTG ACCGACGCCCAGTGGGTCACCTCGCTCTACAACATCGTGCTTGCCGCGTTGTTGCTGCCTTTCGGCAAGTTGGGCGACGC CAGAGGGCGCAAACTGGTGTTTCAAGTCGGTACCGTGATCTTCGTGGCGAGTTCGACGCTCGCCGCCGCCTCGCAGGGTG CGGTGATGCTGCTTGCCGCCCGTGTGCTGCAGGGCATCGGAGGCGCGATGATCATGCCGAACACCCTGTCCACGGTGTCC GCCCTGTTCCGGGGCAAATACCGTGCCGCGGCGTTCGGCGTCTGGGGCGCGGTGATGAGTTCGGCCGCCGCGCTTGGTCC GCTGCTCGGTGGCGTGTTCACCGAGACCTTGGGATGGCGTTGGATCTTCCTGGTGAACCTGCCGCTGGGCATCGCGGTCT TTGTATCGGCCATCTTCCTGGTGCCGAAGACCGGTGGGAACGCCTCGGTCGCCGGTGCCGCGGATGCCGCGCAGGATGCC CGATCCCGTCGCGTCGGTGTGGATATCCCGGGCGTGGTGTTGTCTGCCCTGACCTCGGCCCTGTTGGTGTTCGGTCTTAT CGAAGGCGAGACCTACGGTTGGTGGAAGCAGACCTCCACGCAGTTGAAGCTCGGCGGGTTGAGCTGGAATCGTGACTGGT TGTCGCCGGTGCCGATCTGCCTGATCGCCGGCGCGCTTCTGATGGCCGTCTTCATCCTCTTCGAATCCGCGCGGGGCAAA GCCGGTCGGCCGGTCATGCTGGACATGACCCTGTTCCGCATCAAGACGTTCTCGTGGGGCAATCTGGCGGCCGCGGCCAT CGCCGCCGGCGAGTTCGCGCTGGTGTTCATGCTGCCGTTGTATCTCATCAACGCCCGCGGGCTCAACACGCTGCAGGCCG GTGCGATGCTGGCCGTGATGGGCTTGGGGTCCATCGTCGCAGGTGCGCAGGCCCATGTCATGGCCGCCAGGCTCACCCCG GCCGGCGTGATTCAACTTGGTCTTGTGATCGAGATCATCGCCGTCGCCCTGGTCGCGGTCCTTATGCCTGTGGGGTTCTC TGTGTGGTGGCAGCTTGTTCCCATGGCCGCGTACGGTCTGGGTCTGGGCTTCGCCTCCGCGCAGCTGACCAGCGTGGTGC TCTCCGAAGTACCGGTCATGCAGTCCGGCGAAGGGTCGGCCACCCAGTCCACGGTTCGACAGCTCGGCACCGCCGTCGGT TCGGCCATCTCCGGCGCGTCGTTGGCCATGGCCGTCAACGGAACATTGCCGGCGCGGCTCGAATCCCTCGGGCTGCCCGC CAAGGTCGGCGACGGTCTGGCCCAAGCGGTCAGTGGTTCGGCGGGTGGAGTGATCGGCGTGTTCCGCAGCGGTGATGGAC CGGCGGCCCGATTCGGCGACGAGGCGCCGAAGATTGCCGATGCGATGACTTCAGGGTTCGTCGAAGGCGGCCAGTGGACG CTTCTGGTCGCCGGCATCATGCTGTTCATCGGTTTGCTGGCCTCGGTGGCCGTGCGTCGTGCCGCGTCGTCGCACAACGT GCGTTGA
Upstream 100 bases:
>100_bases GTTCCTTGATATCCAGTGAGACGGTCCGCGCCACGGATGTACTGTGAACGGCGGATAAGCGCATCAGGCGCCTCGATCAT GGCAGAGAGGAAACCCCGTT
Downstream 100 bases:
>100_bases CGCATGACGGCTACGGTCTTATGGGGAGTGCGGCCGTGCGCGGTCGAACGGTGTGGCCCGCATACCGTCCACCGCGCCTG CGGTCGGTTTGCCATCCAGA
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 588; Mature: 588
Protein sequence:
>588_residues MDCSSRSQRQTQVDASPTSPTSSTTMTSSTNPTASSPLPTQAPPWGALWVMALGLAMIVLDSSIVNVSIPTIIDDIGINL TDAQWVTSLYNIVLAALLLPFGKLGDARGRKLVFQVGTVIFVASSTLAAASQGAVMLLAARVLQGIGGAMIMPNTLSTVS ALFRGKYRAAAFGVWGAVMSSAAALGPLLGGVFTETLGWRWIFLVNLPLGIAVFVSAIFLVPKTGGNASVAGAADAAQDA RSRRVGVDIPGVVLSALTSALLVFGLIEGETYGWWKQTSTQLKLGGLSWNRDWLSPVPICLIAGALLMAVFILFESARGK AGRPVMLDMTLFRIKTFSWGNLAAAAIAAGEFALVFMLPLYLINARGLNTLQAGAMLAVMGLGSIVAGAQAHVMAARLTP AGVIQLGLVIEIIAVALVAVLMPVGFSVWWQLVPMAAYGLGLGFASAQLTSVVLSEVPVMQSGEGSATQSTVRQLGTAVG SAISGASLAMAVNGTLPARLESLGLPAKVGDGLAQAVSGSAGGVIGVFRSGDGPAARFGDEAPKIADAMTSGFVEGGQWT LLVAGIMLFIGLLASVAVRRAASSHNVR
Sequences:
>Translated_588_residues MDCSSRSQRQTQVDASPTSPTSSTTMTSSTNPTASSPLPTQAPPWGALWVMALGLAMIVLDSSIVNVSIPTIIDDIGINL TDAQWVTSLYNIVLAALLLPFGKLGDARGRKLVFQVGTVIFVASSTLAAASQGAVMLLAARVLQGIGGAMIMPNTLSTVS ALFRGKYRAAAFGVWGAVMSSAAALGPLLGGVFTETLGWRWIFLVNLPLGIAVFVSAIFLVPKTGGNASVAGAADAAQDA RSRRVGVDIPGVVLSALTSALLVFGLIEGETYGWWKQTSTQLKLGGLSWNRDWLSPVPICLIAGALLMAVFILFESARGK AGRPVMLDMTLFRIKTFSWGNLAAAAIAAGEFALVFMLPLYLINARGLNTLQAGAMLAVMGLGSIVAGAQAHVMAARLTP AGVIQLGLVIEIIAVALVAVLMPVGFSVWWQLVPMAAYGLGLGFASAQLTSVVLSEVPVMQSGEGSATQSTVRQLGTAVG SAISGASLAMAVNGTLPARLESLGLPAKVGDGLAQAVSGSAGGVIGVFRSGDGPAARFGDEAPKIADAMTSGFVEGGQWT LLVAGIMLFIGLLASVAVRRAASSHNVR >Mature_588_residues MDCSSRSQRQTQVDASPTSPTSSTTMTSSTNPTASSPLPTQAPPWGALWVMALGLAMIVLDSSIVNVSIPTIIDDIGINL TDAQWVTSLYNIVLAALLLPFGKLGDARGRKLVFQVGTVIFVASSTLAAASQGAVMLLAARVLQGIGGAMIMPNTLSTVS ALFRGKYRAAAFGVWGAVMSSAAALGPLLGGVFTETLGWRWIFLVNLPLGIAVFVSAIFLVPKTGGNASVAGAADAAQDA RSRRVGVDIPGVVLSALTSALLVFGLIEGETYGWWKQTSTQLKLGGLSWNRDWLSPVPICLIAGALLMAVFILFESARGK AGRPVMLDMTLFRIKTFSWGNLAAAAIAAGEFALVFMLPLYLINARGLNTLQAGAMLAVMGLGSIVAGAQAHVMAARLTP AGVIQLGLVIEIIAVALVAVLMPVGFSVWWQLVPMAAYGLGLGFASAQLTSVVLSEVPVMQSGEGSATQSTVRQLGTAVG SAISGASLAMAVNGTLPARLESLGLPAKVGDGLAQAVSGSAGGVIGVFRSGDGPAARFGDEAPKIADAMTSGFVEGGQWT LLVAGIMLFIGLLASVAVRRAASSHNVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=452, Percent_Identity=27.212389380531, Blast_Score=146, Evalue=3e-36, Organism=Escherichia coli, GI1790195, Length=450, Percent_Identity=26.8888888888889, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1788392, Length=449, Percent_Identity=26.7260579064588, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1789042, Length=494, Percent_Identity=23.8866396761134, Blast_Score=93, Evalue=5e-20, Organism=Escherichia coli, GI1788710, Length=458, Percent_Identity=22.0524017467249, Blast_Score=92, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6324954, Length=423, Percent_Identity=23.6406619385343, Blast_Score=78, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6325455, Length=152, Percent_Identity=29.6052631578947, Blast_Score=77, Evalue=9e-15, Organism=Saccharomyces cerevisiae, GI6321663, Length=197, Percent_Identity=28.9340101522843, Blast_Score=74, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6322958, Length=183, Percent_Identity=27.8688524590164, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 60365; Mature: 60365
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDCSSRSQRQTQVDASPTSPTSSTTMTSSTNPTASSPLPTQAPPWGALWVMALGLAMIVL CCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DSSIVNVSIPTIIDDIGINLTDAQWVTSLYNIVLAALLLPFGKLGDARGRKLVFQVGTVI CCCCEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHEEHHHHH FVASSTLAAASQGAVMLLAARVLQGIGGAMIMPNTLSTVSALFRGKYRAAAFGVWGAVMS EEECHHHHHHCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHH SAAALGPLLGGVFTETLGWRWIFLVNLPLGIAVFVSAIFLVPKTGGNASVAGAADAAQDA HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHH RSRRVGVDIPGVVLSALTSALLVFGLIEGETYGWWKQTSTQLKLGGLSWNRDWLSPVPIC HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCEEEECCCCCCCCCCCHHHHH LIAGALLMAVFILFESARGKAGRPVMLDMTLFRIKTFSWGNLAAAAIAAGEFALVFMLPL HHHHHHHHHHHHHHHHCCCCCCCCEEEEEHEEHHEECCCCCHHHHHHHHHHHHHHHHHHH YLINARGLNTLQAGAMLAVMGLGSIVAGAQAHVMAARLTPAGVIQLGLVIEIIAVALVAV HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LMPVGFSVWWQLVPMAAYGLGLGFASAQLTSVVLSEVPVMQSGEGSATQSTVRQLGTAVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH SAISGASLAMAVNGTLPARLESLGLPAKVGDGLAQAVSGSAGGVIGVFRSGDGPAARFGD HHCCCCEEEEEECCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCEEEEEECCCCCCCCCCC EAPKIADAMTSGFVEGGQWTLLVAGIMLFIGLLASVAVRRAASSHNVR CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MDCSSRSQRQTQVDASPTSPTSSTTMTSSTNPTASSPLPTQAPPWGALWVMALGLAMIVL CCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DSSIVNVSIPTIIDDIGINLTDAQWVTSLYNIVLAALLLPFGKLGDARGRKLVFQVGTVI CCCCEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHEEHHHHH FVASSTLAAASQGAVMLLAARVLQGIGGAMIMPNTLSTVSALFRGKYRAAAFGVWGAVMS EEECHHHHHHCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHH SAAALGPLLGGVFTETLGWRWIFLVNLPLGIAVFVSAIFLVPKTGGNASVAGAADAAQDA HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHH RSRRVGVDIPGVVLSALTSALLVFGLIEGETYGWWKQTSTQLKLGGLSWNRDWLSPVPIC HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCEEEECCCCCCCCCCCHHHHH LIAGALLMAVFILFESARGKAGRPVMLDMTLFRIKTFSWGNLAAAAIAAGEFALVFMLPL HHHHHHHHHHHHHHHHCCCCCCCCEEEEEHEEHHEECCCCCHHHHHHHHHHHHHHHHHHH YLINARGLNTLQAGAMLAVMGLGSIVAGAQAHVMAARLTPAGVIQLGLVIEIIAVALVAV HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LMPVGFSVWWQLVPMAAYGLGLGFASAQLTSVVLSEVPVMQSGEGSATQSTVRQLGTAVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH SAISGASLAMAVNGTLPARLESLGLPAKVGDGLAQAVSGSAGGVIGVFRSGDGPAARFGD HHCCCCEEEEEECCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCEEEEEECCCCCCCCCCC EAPKIADAMTSGFVEGGQWTLLVAGIMLFIGLLASVAVRRAASSHNVR CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]