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The map label for this gene is rnhB [H]

Identifier: 213691335

GI number: 213691335

Start: 487516

End: 488355

Strand: Direct

Name: rnhB [H]

Synonym: Blon_0422

Alternate gene names: 213691335

Gene position: 487516-488355 (Clockwise)

Preceding gene: 213691334

Following gene: 213691336

Centisome position: 17.21

GC content: 62.74

Gene sequence:

>840_bases
ATGATTACCCCGACACTTGACTTGGAACGCAGCCTTGCGGCCCAGGGCTATGACCTTATTACTGGATTCGATGAAGTCGG
CCGCGGCGCGCTCGCCGGCCCGGTGATGGTCGGGTGCGCCGCCATCTGGGCCCGTGATTTGGAGCCGTTGGATGGCGATG
ATGCCGTCGAACTGTCCGGGCGGACCTACCTCGGCGTGCCGGACGGCGTGGCCGACTCCAAAATGCTCACCGAACATAGG
CGCGAGGCGATTTTCGACGAACTGCGCGACTGGTGCGCGGCCTACGCCGTAGGCCAGGCCAGCAACACCGAGATCGACGA
ATGGGGCATCACCTACGCGCTTGGCGTGGCCGCCCTGCGCGCGCTCAGCCAAGTCGAACGCGAACTTGGCTTACGGCTTG
GAGGGAGATTGGCGGCAAGAAAGGCTTCGATGGAGTCTGCGGGGGAGATTGTGGAAGGTCATCCGGGAGACTCCGTAGGG
GAATCCATTGGAAATTGTAGGGAAAGCGTTCGCGCCCTGCCCAAAGTCGCCGGAATTCTCGACGGGCCGAGCGATTACAT
CACCAAGGCGCTCAACACGTTCGACGCGCCGGACGTGCCGATTCCAGCCGATATAACGACCAAAGTCAAAGGCGACCAGC
ATTGCGCCACCGTCGCCACCGCGGCGGTCATCGCCAAAGTGACCCGAGACCGGCTGATGGTCGACCTCGCGCAAAGCAAC
CCATGTTACGCCGCCTACGAATGGGCTCATAACAAGGGCTATGGTTCCGCCGCACACCGTACCGCCATCGCCGAACACGG
GCCGACTCCGCTCCACCGTGTCTCATGGCACCTGACCTGA

Upstream 100 bases:

>100_bases
CTTCGTTGAACCGTGTGAGTCTTTGAACTGATTGAGTTCCGGGCCGTCTGAATCCTGAGCCATATGAATCCTAACCATTG
TGAGACGATGGGAGCCGCGC

Downstream 100 bases:

>100_bases
GCCGCCTGCGACACGACAGTGTGAGCGCTAACGCAAAACTGTTGTGGACGCGCTAAAGTCAGTATTGATTAAGGTACAAG
ACTGGCCGCGCATGGGTGCC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MITPTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTYLGVPDGVADSKMLTEHR
REAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALSQVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVG
ESIGNCRESVRALPKVAGILDGPSDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSN
PCYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSWHLT

Sequences:

>Translated_279_residues
MITPTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTYLGVPDGVADSKMLTEHR
REAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALSQVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVG
ESIGNCRESVRALPKVAGILDGPSDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSN
PCYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSWHLT
>Mature_279_residues
MITPTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTYLGVPDGVADSKMLTEHR
REAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALRALSQVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVG
ESIGNCRESVRALPKVAGILDGPSDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSN
PCYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSWHLT

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 29734; Mature: 29734

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITPTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSG
CCCCCCCHHHHHHHCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
RTYLGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALR
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ALSQVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVGESIGNCRESVRALPKVAGIL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
DGPSDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSN
CCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PCYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSWHLT
CCEEEEEHHCCCCCCCHHHHHHHHHCCCCCHHHCEEECC
>Mature Secondary Structure
MITPTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSG
CCCCCCCHHHHHHHCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
RTYLGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYALGVAALR
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ALSQVERELGLRLGGRLAARKASMESAGEIVEGHPGDSVGESIGNCRESVRALPKVAGIL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
DGPSDYITKALNTFDAPDVPIPADITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSN
CCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PCYAAYEWAHNKGYGSAAHRTAIAEHGPTPLHRVSWHLT
CCEEEEEHHCCCCCCCHHHHHHHHHCCCCCHHHCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA