| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691292
Identifier: 213691292
GI number: 213691292
Start: 440889
End: 442106
Strand: Reverse
Name: 213691292
Synonym: Blon_0379
Alternate gene names: NA
Gene position: 442106-440889 (Counterclockwise)
Preceding gene: 213691293
Following gene: 213691266
Centisome position: 15.61
GC content: 52.13
Gene sequence:
>1218_bases ATGGCAAAAACTATCGAATCAACTGTACTGATTACGCTAGGGCCTGGAATGGAAGCTCCTGCCGGCACATTGTATGCGAC TGGCGACGACCTATCGTTCCGCTATGATTCGACGTACACAATCAGCAGCGATTCCTTCGACCTCTTCCCATCTATGCCCC GCTCGTTGGCCCCATTCTTCTTCTCTGGACTTGGTCCATTTTCGGATTCCGCCCCAGACCGTTGGGGCAGAAAGGTGTTT TCCCGCAGTCTTAAACGGACGCGTGTCAGCGAGTCGGAATATTTGTTCGGTGTCAACGATCTGACAAGACAGGGTGCCAT TCGATTCATTGTTGATGGCAAGCCAGCGGCAGGAGATGAAGGAGTACCCGTACTGTCAAAGCTGCCGGAGTTATTGGACA CTGCGGATGCGGTGGAACAGAACCGCGAGGTAAGTGATGTCTCCTTACGCAGGTTGTATCGGGCAACCGGCTCACTCGGA GGCGCACGACCTAAAGCTTCGGTGTCGGATCGTAATGCGCTGTGGCTGGCCAAATTTCCGAAACCGAACGGCGATGATTG GGATGTTATCGGTTGGGAAGCCGTCACCTTGGAAATCGCGAACATGGCCGGCATCAAAGTGCCCGAACATCGCGTCATTG CAATAAAGGATTCGGAGGAGAGAAGCCGGACCGTGCTATTGACTCACCGTTTTGATCGCGTGTCTGCACCATCAGTTGAG CGAATGGAGCGATTACCTTATATATCCGCAATGACCGCGCTGGAAGCAAGAGATGGGGACGGCGGAGACTGGTTGGATCT AGCAGAATTTACGCGTAGGGCAGGAGGAGACACCATAGAGCTGTGGCGGAGAGCAATGTTTGGCGCGGCCATCGGCAACA CTGATGACCATCTACGAAACCACGGGTATTTGCGTAAGAATAATTCCTGGCAATTGGCACCCGCTTTTGACATGAATCCT GAACCATTCGATCCGTCGCTACCCGACTCACACCAGATGTCATTATTAGGTGACACCGAAGTCGATATAGATAAATTGAT GTCCGATGAGAGTCTGTCTTTGTTCGGTGTAAGCCGTAAATATGCGGATCATTGGTTGCCGACATTGCGATCAGCCTTAT CTCAGGCATTATCTCGAGCCGCGATGCGCCGCATTGACATGCATTCCATCAATCTGATGGCCGAACGTTTTGATAAGGCG GTTCATGCTCTGCAGTAG
Upstream 100 bases:
>100_bases GCTGACACACTCGTAGCCGCATGCGACCCCTATTCCACCGATCTTGGGCGTCTCCGCGCTGGCCAACAACTCCCGAAGCG CGTTCGGAGGTGAATCCCTG
Downstream 100 bases:
>100_bases AGCGATGGGGATCTACCGCAAACTGTTACTCGTCTCGTGGCTCCGGCCTCGGTATGTCTCTGGTATCGCTTAAAAAGTCA CGGCGGTCCTCACACCGGAG
Product: HipA domain protein
Products: NA
Alternate protein names: HipA Domain Protein; Xin-Antitoxin System Toxin Component HipA Family; HipA Protein; Amidophosphoribosyl Transferase; HipA-Like C-Terminal Domain-Containing; HipA-Like; HipA-Like Protein; Protein Related Capsule Biosynthesis -Like; Protein Containing HipA-Like C-Terminal Domain; Transcriptional Regulator; Conserved Protein; Orf_Bo
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MAKTIESTVLITLGPGMEAPAGTLYATGDDLSFRYDSTYTISSDSFDLFPSMPRSLAPFFFSGLGPFSDSAPDRWGRKVF SRSLKRTRVSESEYLFGVNDLTRQGAIRFIVDGKPAAGDEGVPVLSKLPELLDTADAVEQNREVSDVSLRRLYRATGSLG GARPKASVSDRNALWLAKFPKPNGDDWDVIGWEAVTLEIANMAGIKVPEHRVIAIKDSEERSRTVLLTHRFDRVSAPSVE RMERLPYISAMTALEARDGDGGDWLDLAEFTRRAGGDTIELWRRAMFGAAIGNTDDHLRNHGYLRKNNSWQLAPAFDMNP EPFDPSLPDSHQMSLLGDTEVDIDKLMSDESLSLFGVSRKYADHWLPTLRSALSQALSRAAMRRIDMHSINLMAERFDKA VHALQ
Sequences:
>Translated_405_residues MAKTIESTVLITLGPGMEAPAGTLYATGDDLSFRYDSTYTISSDSFDLFPSMPRSLAPFFFSGLGPFSDSAPDRWGRKVF SRSLKRTRVSESEYLFGVNDLTRQGAIRFIVDGKPAAGDEGVPVLSKLPELLDTADAVEQNREVSDVSLRRLYRATGSLG GARPKASVSDRNALWLAKFPKPNGDDWDVIGWEAVTLEIANMAGIKVPEHRVIAIKDSEERSRTVLLTHRFDRVSAPSVE RMERLPYISAMTALEARDGDGGDWLDLAEFTRRAGGDTIELWRRAMFGAAIGNTDDHLRNHGYLRKNNSWQLAPAFDMNP EPFDPSLPDSHQMSLLGDTEVDIDKLMSDESLSLFGVSRKYADHWLPTLRSALSQALSRAAMRRIDMHSINLMAERFDKA VHALQ >Mature_404_residues AKTIESTVLITLGPGMEAPAGTLYATGDDLSFRYDSTYTISSDSFDLFPSMPRSLAPFFFSGLGPFSDSAPDRWGRKVFS RSLKRTRVSESEYLFGVNDLTRQGAIRFIVDGKPAAGDEGVPVLSKLPELLDTADAVEQNREVSDVSLRRLYRATGSLGG ARPKASVSDRNALWLAKFPKPNGDDWDVIGWEAVTLEIANMAGIKVPEHRVIAIKDSEERSRTVLLTHRFDRVSAPSVER MERLPYISAMTALEARDGDGGDWLDLAEFTRRAGGDTIELWRRAMFGAAIGNTDDHLRNHGYLRKNNSWQLAPAFDMNPE PFDPSLPDSHQMSLLGDTEVDIDKLMSDESLSLFGVSRKYADHWLPTLRSALSQALSRAAMRRIDMHSINLMAERFDKAV HALQ
Specific function: Unknown
COG id: COG3550
COG function: function code R; Uncharacterized protein related to capsule biosynthesis enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45016; Mature: 44885
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: PS00018 EF_HAND_1 ; PS00334 MYB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTIESTVLITLGPGMEAPAGTLYATGDDLSFRYDSTYTISSDSFDLFPSMPRSLAPFF CCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEECCEEEECCCCCCCCCCCCHHHHHHH FSGLGPFSDSAPDRWGRKVFSRSLKRTRVSESEYLFGVNDLTRQGAIRFIVDGKPAAGDE HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCCEEEEECCCCCCCCC GVPVLSKLPELLDTADAVEQNREVSDVSLRRLYRATGSLGGARPKASVSDRNALWLAKFP CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC KPNGDDWDVIGWEAVTLEIANMAGIKVPEHRVIAIKDSEERSRTVLLTHRFDRVSAPSVE CCCCCCCCEECEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCHH RMERLPYISAMTALEARDGDGGDWLDLAEFTRRAGGDTIELWRRAMFGAAIGNTDDHLRN HHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHC HGYLRKNNSWQLAPAFDMNPEPFDPSLPDSHQMSLLGDTEVDIDKLMSDESLSLFGVSRK CCEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCEEEECHHH YADHWLPTLRSALSQALSRAAMRRIDMHSINLMAERFDKAVHALQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AKTIESTVLITLGPGMEAPAGTLYATGDDLSFRYDSTYTISSDSFDLFPSMPRSLAPFF CCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEECCEEEECCCCCCCCCCCCHHHHHHH FSGLGPFSDSAPDRWGRKVFSRSLKRTRVSESEYLFGVNDLTRQGAIRFIVDGKPAAGDE HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCCEEEEECCCCCCCCC GVPVLSKLPELLDTADAVEQNREVSDVSLRRLYRATGSLGGARPKASVSDRNALWLAKFP CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC KPNGDDWDVIGWEAVTLEIANMAGIKVPEHRVIAIKDSEERSRTVLLTHRFDRVSAPSVE CCCCCCCCEECEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCHH RMERLPYISAMTALEARDGDGGDWLDLAEFTRRAGGDTIELWRRAMFGAAIGNTDDHLRN HHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHC HGYLRKNNSWQLAPAFDMNPEPFDPSLPDSHQMSLLGDTEVDIDKLMSDESLSLFGVSRK CCEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCEEEECHHH YADHWLPTLRSALSQALSRAAMRRIDMHSINLMAERFDKAVHALQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA