| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is pbpG [H]
Identifier: 213691092
GI number: 213691092
Start: 200999
End: 203320
Strand: Reverse
Name: pbpG [H]
Synonym: Blon_0171
Alternate gene names: 213691092
Gene position: 203320-200999 (Counterclockwise)
Preceding gene: 213691097
Following gene: 213691090
Centisome position: 7.18
GC content: 59.22
Gene sequence:
>2322_bases ATGGCTTCTTATACTCGTCGTGCACATTCGGGAGGCAATGGCCCCGCTCTGAGGCAACCGCGCACCGCGCAAAGCAGAGC CGACCACTCCGCACAGGAGGGCCCCTATACGCCCCAGGAGAGCCGTTCCCGCCACGCAAGCCACAAGGCTTCCAATAGCC ATCGAGCTCCGAACAGGAAGAAGAACACGGGAAAAGGCAAGCACCGTGTACTGAAATGGGTGCTGGGCATCTTCTTCTCC CTGATTGGACTGGGCGTGCTGGCCGGTATCGCAGTATTCGCATATCTGTACACCACCACTGAGGTCCCGCAACCCGAGAA GTTCGCGTTGGCCGAGAAAACCACCGTGTATTACGCGGACGGCACCACCGCGATCGGCTCCTACGCGGAGCAGAATCGTT CAATCATTTCTTGCGAGGGGCTGCCGGACTACATCGGCAACGCGATTGTGGCGTCTGAAAACCGTACGTTCTACACGGAT AAAGGTCTTGATCTGAAGGGCATCGCCCGCGCATTCATTAATAATGTGACCAAGGGCACGCGCCAAGGTGGTTCCACCAT CACCCAGCAGTACGCCGAGCGGTATTACATGGGCGAAACCACATCCTATGTGGGCAAGGCGCGCGAGGCCATCATGGCCC TCAAGATCGCGCAGACCGAGTCCAAGGACGAGGTGCTGTGCAACTACATGAACACCATCTATCTGGGCCGCAACTCCTAC GGTATCCAGGAAGCAGCCAAGGCATACTTCAATAAGGACGCCAAGGATCTGACGCTGTCTGAGGCGGCGATGATCGCCGG CATTATTCCGTCACCGTCCACGTGGGATCCAGCCGATAACGCCGATATGGCCAAATCGCGCTTCAAGCGTGTGCTGAACA TCATGCAGGAGGATGGTTACATCACCGCCAGGCAGCACACTGATGCCAAGTTCCCGCAGACCGCCGCGGTGGCGCAGCAG AACGAGTACGCGGGGCCGAACGGTTATCTGCTGGATATGGTGTGCCGTGAGCTGGTGCAGTCCAAGGCCTTTACCAAAGA GGATTTGGATACCGGCGGATACAAGATCATCAGCACCATCGACAAGGGCAAGCAGGATCTCATGCAGTCCATCGGCGACA CCCGCCTCAACGACATGCCCGAATCCCTGCAGATCGGCGGCATAGCGCTCAACCCCAAGAACGGCGAAGTATTGTCCGTA TACGCCGGTTCGGATTATCTGTCCAAGCAGCTCAACAACGCCGATCAGGCCCTGTTCGAACCGGGTTCGACTATGAAGCC GTTCGCTTTGCTGGGGGCCGCGCAATCCGGCGTCAGCTTCGATACGTTGTTCAACGGCAATTCCCACCAGCACTTCACCG GCTTGGATCAAGAGGTGAATAACGCTCTGGAGAACAACTGGGGCAGCATCAATCTGTATCAGGCCACCGCGAACTCGGTG AACACGGTGTTCATGAACGTCAATGAGCATCTGACGCCGAAACGCACGGCCGATATCGCCCATGAGGCTGGCATCCAGGG CGACATCGACGAGGCCTCCATGTACAACGTGCTGGGCATCAACGCCCTGACCGTGTGGGATCTGGCGCAGGGCCATTCGA CCATCGCCAACAATGGCGTGAGGAACACCTTGCATATGGTGTCCAAAGTGCTCGACTCCCACAACAAGGACATGTACAAC GCGCCCAGCGAAGGCACCAAGGTGTTCGACGCCAATGATTGCGCCCTGGTGCAGAAAGCCATGCAGGGCACGACCACCTA CGGCACCGCGGCCGGCACATCGGCCAAGCTGGGCCGTCCCATCGCCGGCAAGTCCGGCACCGCCAACGACGAACTGGCAT CATCGTTCGTGGGGTACGCCCCAAGCATGATGAATGTCTGGGCCATCTGGAACCCGGATGGCAACGGCAATCCTCAAGTG GTGCCGGCTTTCTCGGGATATGGCATCTCCTCCACCGGATATCCGGCGCACCTGTTCCAGGAATTCATGGCCCAGGCCCT GCAGGGCACGGCGGTGGAGCAGTTCCCGACGGCCAAAGACAACGGCAAGATCGGCGGCCCCGATGGCACTTGGGGCCTGG CCAGGGGGCAGAGCGGCGTCCAACCCTACGTCAACAACCAGTCCAACGCCAACAGGCAGTCCACCGAAGATGCGCAGAAG CAGGCTGAGCAGGACGCACAGCAGAAGGCGGCCGAAGAGGAAGCCAAGAAGCGACAGCAGGCCCAGGAGTTCGCCCAGCA GTGCCTCGCCAATCCGAGCTATTCCACCGAGTGCCCGAATTATCCCGGCAATACCGGCGCTGACAACGAGAACAAACGGT AA
Upstream 100 bases:
>100_bases CGTTCCCAATTGTAAGAATTCCGGAAAAATACCGGTATCAACGCGTGTGGTTACGCTCACGTCAAACGATTGTTCAAGGC CAACAGTTACGGTGGACACC
Downstream 100 bases:
>100_bases CGATAATGGGTAATTCCGGAGGCACCGGCGGGAACACCGACACCAACGGCGTCAAGTAGTAAGTAGACACAGACAACGAA GCTCCCTCTGACGCAATCAG
Product: glycosyl transferase, family 51
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 773; Mature: 772
Protein sequence:
>773_residues MASYTRRAHSGGNGPALRQPRTAQSRADHSAQEGPYTPQESRSRHASHKASNSHRAPNRKKNTGKGKHRVLKWVLGIFFS LIGLGVLAGIAVFAYLYTTTEVPQPEKFALAEKTTVYYADGTTAIGSYAEQNRSIISCEGLPDYIGNAIVASENRTFYTD KGLDLKGIARAFINNVTKGTRQGGSTITQQYAERYYMGETTSYVGKAREAIMALKIAQTESKDEVLCNYMNTIYLGRNSY GIQEAAKAYFNKDAKDLTLSEAAMIAGIIPSPSTWDPADNADMAKSRFKRVLNIMQEDGYITARQHTDAKFPQTAAVAQQ NEYAGPNGYLLDMVCRELVQSKAFTKEDLDTGGYKIISTIDKGKQDLMQSIGDTRLNDMPESLQIGGIALNPKNGEVLSV YAGSDYLSKQLNNADQALFEPGSTMKPFALLGAAQSGVSFDTLFNGNSHQHFTGLDQEVNNALENNWGSINLYQATANSV NTVFMNVNEHLTPKRTADIAHEAGIQGDIDEASMYNVLGINALTVWDLAQGHSTIANNGVRNTLHMVSKVLDSHNKDMYN APSEGTKVFDANDCALVQKAMQGTTTYGTAAGTSAKLGRPIAGKSGTANDELASSFVGYAPSMMNVWAIWNPDGNGNPQV VPAFSGYGISSTGYPAHLFQEFMAQALQGTAVEQFPTAKDNGKIGGPDGTWGLARGQSGVQPYVNNQSNANRQSTEDAQK QAEQDAQQKAAEEEAKKRQQAQEFAQQCLANPSYSTECPNYPGNTGADNENKR
Sequences:
>Translated_773_residues MASYTRRAHSGGNGPALRQPRTAQSRADHSAQEGPYTPQESRSRHASHKASNSHRAPNRKKNTGKGKHRVLKWVLGIFFS LIGLGVLAGIAVFAYLYTTTEVPQPEKFALAEKTTVYYADGTTAIGSYAEQNRSIISCEGLPDYIGNAIVASENRTFYTD KGLDLKGIARAFINNVTKGTRQGGSTITQQYAERYYMGETTSYVGKAREAIMALKIAQTESKDEVLCNYMNTIYLGRNSY GIQEAAKAYFNKDAKDLTLSEAAMIAGIIPSPSTWDPADNADMAKSRFKRVLNIMQEDGYITARQHTDAKFPQTAAVAQQ NEYAGPNGYLLDMVCRELVQSKAFTKEDLDTGGYKIISTIDKGKQDLMQSIGDTRLNDMPESLQIGGIALNPKNGEVLSV YAGSDYLSKQLNNADQALFEPGSTMKPFALLGAAQSGVSFDTLFNGNSHQHFTGLDQEVNNALENNWGSINLYQATANSV NTVFMNVNEHLTPKRTADIAHEAGIQGDIDEASMYNVLGINALTVWDLAQGHSTIANNGVRNTLHMVSKVLDSHNKDMYN APSEGTKVFDANDCALVQKAMQGTTTYGTAAGTSAKLGRPIAGKSGTANDELASSFVGYAPSMMNVWAIWNPDGNGNPQV VPAFSGYGISSTGYPAHLFQEFMAQALQGTAVEQFPTAKDNGKIGGPDGTWGLARGQSGVQPYVNNQSNANRQSTEDAQK QAEQDAQQKAAEEEAKKRQQAQEFAQQCLANPSYSTECPNYPGNTGADNENKR >Mature_772_residues ASYTRRAHSGGNGPALRQPRTAQSRADHSAQEGPYTPQESRSRHASHKASNSHRAPNRKKNTGKGKHRVLKWVLGIFFSL IGLGVLAGIAVFAYLYTTTEVPQPEKFALAEKTTVYYADGTTAIGSYAEQNRSIISCEGLPDYIGNAIVASENRTFYTDK GLDLKGIARAFINNVTKGTRQGGSTITQQYAERYYMGETTSYVGKAREAIMALKIAQTESKDEVLCNYMNTIYLGRNSYG IQEAAKAYFNKDAKDLTLSEAAMIAGIIPSPSTWDPADNADMAKSRFKRVLNIMQEDGYITARQHTDAKFPQTAAVAQQN EYAGPNGYLLDMVCRELVQSKAFTKEDLDTGGYKIISTIDKGKQDLMQSIGDTRLNDMPESLQIGGIALNPKNGEVLSVY AGSDYLSKQLNNADQALFEPGSTMKPFALLGAAQSGVSFDTLFNGNSHQHFTGLDQEVNNALENNWGSINLYQATANSVN TVFMNVNEHLTPKRTADIAHEAGIQGDIDEASMYNVLGINALTVWDLAQGHSTIANNGVRNTLHMVSKVLDSHNKDMYNA PSEGTKVFDANDCALVQKAMQGTTTYGTAAGTSAKLGRPIAGKSGTANDELASSFVGYAPSMMNVWAIWNPDGNGNPQVV PAFSGYGISSTGYPAHLFQEFMAQALQGTAVEQFPTAKDNGKIGGPDGTWGLARGQSGVQPYVNNQSNANRQSTEDAQKQ AEQDAQQKAAEEEAKKRQQAQEFAQQCLANPSYSTECPNYPGNTGADNENKR
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=300, Percent_Identity=33.3333333333333, Blast_Score=150, Evalue=3e-37, Organism=Escherichia coli, GI1786343, Length=513, Percent_Identity=26.7056530214425, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1789601, Length=227, Percent_Identity=28.1938325991189, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1788867, Length=443, Percent_Identity=24.8306997742664, Blast_Score=93, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 83760; Mature: 83629
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASYTRRAHSGGNGPALRQPRTAQSRADHSAQEGPYTPQESRSRHASHKASNSHRAPNRK CCCCCCHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC KNTGKGKHRVLKWVLGIFFSLIGLGVLAGIAVFAYLYTTTEVPQPEKFALAEKTTVYYAD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCEEEEEC GTTAIGSYAEQNRSIISCEGLPDYIGNAIVASENRTFYTDKGLDLKGIARAFINNVTKGT CCHHHHHHHHHCCCEEEECCCHHHHCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHH RQGGSTITQQYAERYYMGETTSYVGKAREAIMALKIAQTESKDEVLCNYMNTIYLGRNSY CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCC GIQEAAKAYFNKDAKDLTLSEAAMIAGIIPSPSTWDPADNADMAKSRFKRVLNIMQEDGY CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE ITARQHTDAKFPQTAAVAQQNEYAGPNGYLLDMVCRELVQSKAFTKEDLDTGGYKIISTI EEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCEEEEHHH DKGKQDLMQSIGDTRLNDMPESLQIGGIALNPKNGEVLSVYAGSDYLSKQLNNADQALFE HHHHHHHHHHHCCCHHHCCCCCEEECCEEECCCCCCEEEEEECCHHHHHHHCCHHHHHHC PGSTMKPFALLGAAQSGVSFDTLFNGNSHQHFTGLDQEVNNALENNWGSINLYQATANSV CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC NTVFMNVNEHLTPKRTADIAHEAGIQGDIDEASMYNVLGINALTVWDLAQGHSTIANNGV EEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEHHHHCCCHHHHCCCH RNTLHMVSKVLDSHNKDMYNAPSEGTKVFDANDCALVQKAMQGTTTYGTAAGTSAKLGRP HHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCHHCCCC IAGKSGTANDELASSFVGYAPSMMNVWAIWNPDGNGNPQVVPAFSGYGISSTGYPAHLFQ CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHH EFMAQALQGTAVEQFPTAKDNGKIGGPDGTWGLARGQSGVQPYVNNQSNANRQSTEDAQK HHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH QAEQDAQQKAAEEEAKKRQQAQEFAQQCLANPSYSTECPNYPGNTGADNENKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ASYTRRAHSGGNGPALRQPRTAQSRADHSAQEGPYTPQESRSRHASHKASNSHRAPNRK CCCCCHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC KNTGKGKHRVLKWVLGIFFSLIGLGVLAGIAVFAYLYTTTEVPQPEKFALAEKTTVYYAD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCEEEEEC GTTAIGSYAEQNRSIISCEGLPDYIGNAIVASENRTFYTDKGLDLKGIARAFINNVTKGT CCHHHHHHHHHCCCEEEECCCHHHHCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHH RQGGSTITQQYAERYYMGETTSYVGKAREAIMALKIAQTESKDEVLCNYMNTIYLGRNSY CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCC GIQEAAKAYFNKDAKDLTLSEAAMIAGIIPSPSTWDPADNADMAKSRFKRVLNIMQEDGY CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE ITARQHTDAKFPQTAAVAQQNEYAGPNGYLLDMVCRELVQSKAFTKEDLDTGGYKIISTI EEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCEEEEHHH DKGKQDLMQSIGDTRLNDMPESLQIGGIALNPKNGEVLSVYAGSDYLSKQLNNADQALFE HHHHHHHHHHHCCCHHHCCCCCEEECCEEECCCCCCEEEEEECCHHHHHHHCCHHHHHHC PGSTMKPFALLGAAQSGVSFDTLFNGNSHQHFTGLDQEVNNALENNWGSINLYQATANSV CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC NTVFMNVNEHLTPKRTADIAHEAGIQGDIDEASMYNVLGINALTVWDLAQGHSTIANNGV EEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEHHHHCCCHHHHCCCH RNTLHMVSKVLDSHNKDMYNAPSEGTKVFDANDCALVQKAMQGTTTYGTAAGTSAKLGRP HHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCHHCCCC IAGKSGTANDELASSFVGYAPSMMNVWAIWNPDGNGNPQVVPAFSGYGISSTGYPAHLFQ CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHH EFMAQALQGTAVEQFPTAKDNGKIGGPDGTWGLARGQSGVQPYVNNQSNANRQSTEDAQK HHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH QAEQDAQQKAAEEEAKKRQQAQEFAQQCLANPSYSTECPNYPGNTGADNENKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]