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The map label for this gene is rhaS [C]

Identifier: 213159006

GI number: 213159006

Start: 3824100

End: 3825002

Strand: Direct

Name: rhaS [C]

Synonym: AB57_3713

Alternate gene names: 213159006

Gene position: 3824100-3825002 (Clockwise)

Preceding gene: 213159004

Following gene: 213159007

Centisome position: 94.41

GC content: 40.42

Gene sequence:

>903_bases
ATGGAAACCATACATGATTTTTATCGCCGCTTTTCTTTAACCAGAGATAGCGATTACTCGGTTCCATCGACTTCGTTTGG
ACATTTTAACGTGTTCCAACGCGATGCCTGCTCATTCCTCACACCTTATAGCCGCCGCGATTATTATAAAATTTCACTGG
TTTTAGGCACAGGTGAACTTCACTATGCTAACCGCTGGATTCGGGTAGACCGCCCTGCATTACTGTTTTCAAACCCAATG
GTTCCCTACGCATGGGAAATTAATTCGCCTGAACAGGCAGGCTGGTTTTGTCTATTTACCGAAGAGTTTGTAAACCAAGA
ATCGCGACAAAGCTTTTTAAAAGACTCACCACTGTTTAAAGTCGACGGCGACCCGCTGTATTTTTTAAACGACCAACAAG
TCGAAGAAATTTCATTTATTTTCAAAAAGATGATGAATGAAATAAATTCAGACTATATTCATAAATACAATGTTTTAAGA
AATTATTTGCATCTGATTGTGCATGAAGCCATGAAAATGCAACCGACCCAACAGTTTGAAAAACATAGTAATGCTTCGGT
GCGCATTTGCCATTTGTTCTTTGAATTATTAGAGCGCCAGTTCCCCATCGACTCGCCCCATTTTCAGCTTAAACTCAAAA
CTGCAAATGACTTTGCCTATGGCTTGTCTGTGCATGTGAACCATTTAAACCGAGCTGTAAAAGAAGCCACAGGTAAAACT
ACGTCTGAGCATATTAGCTCGCGCATTACGCAAGAAGCCAAAGCGCTGCTACAACACACCAGTTGGAATATTTCCGAAAT
TGCCTATAGCTTAGGCTTTGAATATTCAGCATATTTCACCAATTTCTTTAAGAAAAATACCGGTTTTTCGCCTAAAAAAT
TCCGCGAAGACTGTGTGGCCTAA

Upstream 100 bases:

>100_bases
TTTAAATGAACAGATTGATCACGCTACAAATAAAAGCTACAGTAAATAAAGTTTGAATTTTATAACTTTAAATAAATTAA
TAATGCATGCAGGCAAAGAC

Downstream 100 bases:

>100_bases
AAACAGATTGTTTGAATTTTATAATTATTGGTTTGAATGTTATACGTCAGTTTGAACCAAAGCATTTTATAGTTTTTCTA
CTCAAGTGATTTTGCAAAAA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Arac Family; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulatory Protein; AraC-Family Regulatory Protein; Transcriptional Regulator AraC Type; Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Transcription Regulator

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
METIHDFYRRFSLTRDSDYSVPSTSFGHFNVFQRDACSFLTPYSRRDYYKISLVLGTGELHYANRWIRVDRPALLFSNPM
VPYAWEINSPEQAGWFCLFTEEFVNQESRQSFLKDSPLFKVDGDPLYFLNDQQVEEISFIFKKMMNEINSDYIHKYNVLR
NYLHLIVHEAMKMQPTQQFEKHSNASVRICHLFFELLERQFPIDSPHFQLKLKTANDFAYGLSVHVNHLNRAVKEATGKT
TSEHISSRITQEAKALLQHTSWNISEIAYSLGFEYSAYFTNFFKKNTGFSPKKFREDCVA

Sequences:

>Translated_300_residues
METIHDFYRRFSLTRDSDYSVPSTSFGHFNVFQRDACSFLTPYSRRDYYKISLVLGTGELHYANRWIRVDRPALLFSNPM
VPYAWEINSPEQAGWFCLFTEEFVNQESRQSFLKDSPLFKVDGDPLYFLNDQQVEEISFIFKKMMNEINSDYIHKYNVLR
NYLHLIVHEAMKMQPTQQFEKHSNASVRICHLFFELLERQFPIDSPHFQLKLKTANDFAYGLSVHVNHLNRAVKEATGKT
TSEHISSRITQEAKALLQHTSWNISEIAYSLGFEYSAYFTNFFKKNTGFSPKKFREDCVA
>Mature_300_residues
METIHDFYRRFSLTRDSDYSVPSTSFGHFNVFQRDACSFLTPYSRRDYYKISLVLGTGELHYANRWIRVDRPALLFSNPM
VPYAWEINSPEQAGWFCLFTEEFVNQESRQSFLKDSPLFKVDGDPLYFLNDQQVEEISFIFKKMMNEINSDYIHKYNVLR
NYLHLIVHEAMKMQPTQQFEKHSNASVRICHLFFELLERQFPIDSPHFQLKLKTANDFAYGLSVHVNHLNRAVKEATGKT
TSEHISSRITQEAKALLQHTSWNISEIAYSLGFEYSAYFTNFFKKNTGFSPKKFREDCVA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35341; Mature: 35341

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIHDFYRRFSLTRDSDYSVPSTSFGHFNVFQRDACSFLTPYSRRDYYKISLVLGTGEL
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCCE
HYANRWIRVDRPALLFSNPMVPYAWEINSPEQAGWFCLFTEEFVNQESRQSFLKDSPLFK
EECCCEEEECCCEEEECCCCCCEEEECCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCEE
VDGDPLYFLNDQQVEEISFIFKKMMNEINSDYIHKYNVLRNYLHLIVHEAMKMQPTQQFE
ECCCEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KHSNASVRICHLFFELLERQFPIDSPHFQLKLKTANDFAYGLSVHVNHLNRAVKEATGKT
HCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEHEEHHHHHHHHHHHHCCCC
TSEHISSRITQEAKALLQHTSWNISEIAYSLGFEYSAYFTNFFKKNTGFSPKKFREDCVA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
METIHDFYRRFSLTRDSDYSVPSTSFGHFNVFQRDACSFLTPYSRRDYYKISLVLGTGEL
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCCE
HYANRWIRVDRPALLFSNPMVPYAWEINSPEQAGWFCLFTEEFVNQESRQSFLKDSPLFK
EECCCEEEECCCEEEECCCCCCEEEECCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCEE
VDGDPLYFLNDQQVEEISFIFKKMMNEINSDYIHKYNVLRNYLHLIVHEAMKMQPTQQFE
ECCCEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KHSNASVRICHLFFELLERQFPIDSPHFQLKLKTANDFAYGLSVHVNHLNRAVKEATGKT
HCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEHEEHHHHHHHHHHHHCCCC
TSEHISSRITQEAKALLQHTSWNISEIAYSLGFEYSAYFTNFFKKNTGFSPKKFREDCVA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA