| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is ycbL [C]
Identifier: 21244723
GI number: 21244723
Start: 4697619
End: 4698653
Strand: Reverse
Name: ycbL [C]
Synonym: XAC4005
Alternate gene names: 21244723
Gene position: 4698653-4697619 (Counterclockwise)
Preceding gene: 21244724
Following gene: 77748750
Centisome position: 90.79
GC content: 65.6
Gene sequence:
>1035_bases GTGCGTAAGCTCGTGCCTGTGGCGACATGCACGACAGCGACGCCAGGCCTGGGCCTACACTGCAGTTCTTACAGCCGCCG CGGGGTGCGAATGACAGCGACAGCCGAGTTCAACATCCACACGATCGATACCGGCTTTGGTGGCGTGCAATTCGATGCGG CGTATCTGGTCGTCCAAGCGCAGCGGGCTGCCCTGATCGATTGCGGTACCTCGCTGTCGGTACCGCAGATGCTGGCCGCC GTGCAGGCGGCCGGGTTGTCGCCAGCGCAGGTGGAGTGGTTGATCCTGACCCATGTGCATCTGGATCATGCCGGCGGGGC AGGAGCGTTATTGCGGCATTTGCCCCATGCGCAGGTGCTGGTGCATCCGCGCGGTGCGCCGCATCTGGTCGACCCCACGC GGCTGATTGCCGGTGCCACCGCGGTGTATGGCGAGGCGGACATGGCGCGCAACTACGGCATCATCGAGCCGGTGCCGGCC GAGCGTGTGGTCGCGGCGGACGAGGGTCATGCCGTGATGCTGGGCGAGCGCGTGCTGCGCATCATCGAGACGCCTGGACA TGCACGCCATCATCTATGCGTGTGGGATGCGCGCAGCCGCAGCTGGTTCACCGGCGACACCTTCGGCCTGTCGTATCGCC AATTGGACAGCGCGCGCGGCGCGTTCATTCTGCCGACGTCTTCGCCGGTGCAGTTCGAACCCGAGGCCATGCTGCAGTCG ATCGCGCGCCTGATGGACGCCGCACCGCAGGCGATGTATCTGACCCATTACGGCCGTGTCACCTCGCCAGAACCGTTGGC GCAGGCGCTGGACGAGCAGATTCATGCGATGACCGACATTGCGCTGGGCTGCGCGCAGCGTCCGGACCGGCATCGCTGCA TGGTGGCGGCATTGACCGCGTTGTATCTGGAGCGCGCACGCCAACATGGATGTCGGTTGGACGATGCCGCCGTGGAGCGA CTGCTGGCAACAGATATCGAGCTCAACGCGCAAGGGCTGGGCTGTTGGCTGGATCGTGCGGCGCGTACGGGTTAG
Upstream 100 bases:
>100_bases TGCATGCGCAAGTGGATGCCGACGTGGTTCTTGCTGCGATGGACGCCTTGCGCGAGGCGTGACCTGCGCTGCGCAGCAGG CGTAGAGGTGGACGATCGCG
Downstream 100 bases:
>100_bases TACAACCTTGGCCGCCGAACGAGGGACCTTCTGCGGCATGCCGTCTTTACGGCGTGTCCTGCGATGGTGCGTGGATGGGG TGCATTACCGCTCAACCGAA
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily Protein; Zn-Dependent Hydrolase; Beta-Lactamase-Like; Beta-Lactamase Related Protein; Metallo-Beta-Lactamase Family Hydrolase; Metallo-Beta-Lactamase-Related Protein; Zn-Dependent Hydrolase Including Glyoxylase; Zn-Dependent Hydrolase Glyoxylase; Metallo-Beta-Lactamase; Hydroxyacylglutathione Hydrolase; Zinc-Dependant Hydrolase; Metallo-Beta-Lactamase Related Protein; Metallo Beta-Lactamase Protein; Metallo-Beta-Lactamase Domain Protein; Hydrolase; Zn-Dependent Hydrolases Including Glyoxylases
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MRKLVPVATCTTATPGLGLHCSSYSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQAQRAALIDCGTSLSVPQMLAA VQAAGLSPAQVEWLILTHVHLDHAGGAGALLRHLPHAQVLVHPRGAPHLVDPTRLIAGATAVYGEADMARNYGIIEPVPA ERVVAADEGHAVMLGERVLRIIETPGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFILPTSSPVQFEPEAMLQS IARLMDAAPQAMYLTHYGRVTSPEPLAQALDEQIHAMTDIALGCAQRPDRHRCMVAALTALYLERARQHGCRLDDAAVER LLATDIELNAQGLGCWLDRAARTG
Sequences:
>Translated_344_residues MRKLVPVATCTTATPGLGLHCSSYSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQAQRAALIDCGTSLSVPQMLAA VQAAGLSPAQVEWLILTHVHLDHAGGAGALLRHLPHAQVLVHPRGAPHLVDPTRLIAGATAVYGEADMARNYGIIEPVPA ERVVAADEGHAVMLGERVLRIIETPGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFILPTSSPVQFEPEAMLQS IARLMDAAPQAMYLTHYGRVTSPEPLAQALDEQIHAMTDIALGCAQRPDRHRCMVAALTALYLERARQHGCRLDDAAVER LLATDIELNAQGLGCWLDRAARTG >Mature_344_residues MRKLVPVATCTTATPGLGLHCSSYSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQAQRAALIDCGTSLSVPQMLAA VQAAGLSPAQVEWLILTHVHLDHAGGAGALLRHLPHAQVLVHPRGAPHLVDPTRLIAGATAVYGEADMARNYGIIEPVPA ERVVAADEGHAVMLGERVLRIIETPGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFILPTSSPVQFEPEAMLQS IARLMDAAPQAMYLTHYGRVTSPEPLAQALDEQIHAMTDIALGCAQRPDRHRCMVAALTALYLERARQHGCRLDDAAVER LLATDIELNAQGLGCWLDRAARTG
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37161; Mature: 37161
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKLVPVATCTTATPGLGLHCSSYSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQA CCCCEEEEEECCCCCCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEC QRAALIDCGTSLSVPQMLAAVQAAGLSPAQVEWLILTHVHLDHAGGAGALLRHLPHAQVL CHHEEEECCCCCCHHHHHHHHHHCCCCCHHEEEEEEEEEEEECCCCHHHHHHHCCCCEEE VHPRGAPHLVDPTRLIAGATAVYGEADMARNYGIIEPVPAERVVAADEGHAVMLGERVLR EECCCCCCCCCHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCEEECCCCCEEEHHHHHHH IIETPGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFILPTSSPVQFEPEAMLQS HHCCCCCCCCEEEEEECCCCCEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHH IARLMDAAPQAMYLTHYGRVTSPEPLAQALDEQIHAMTDIALGCAQRPDRHRCMVAALTA HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LYLERARQHGCRLDDAAVERLLATDIELNAQGLGCWLDRAARTG HHHHHHHHCCCCCCHHHHHHHHHHCCEECCCCCHHHHHHHHCCC >Mature Secondary Structure MRKLVPVATCTTATPGLGLHCSSYSRRGVRMTATAEFNIHTIDTGFGGVQFDAAYLVVQA CCCCEEEEEECCCCCCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEC QRAALIDCGTSLSVPQMLAAVQAAGLSPAQVEWLILTHVHLDHAGGAGALLRHLPHAQVL CHHEEEECCCCCCHHHHHHHHHHCCCCCHHEEEEEEEEEEEECCCCHHHHHHHCCCCEEE VHPRGAPHLVDPTRLIAGATAVYGEADMARNYGIIEPVPAERVVAADEGHAVMLGERVLR EECCCCCCCCCHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCEEECCCCCEEEHHHHHHH IIETPGHARHHLCVWDARSRSWFTGDTFGLSYRQLDSARGAFILPTSSPVQFEPEAMLQS HHCCCCCCCCEEEEEECCCCCEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHH IARLMDAAPQAMYLTHYGRVTSPEPLAQALDEQIHAMTDIALGCAQRPDRHRCMVAALTA HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LYLERARQHGCRLDDAAVERLLATDIELNAQGLGCWLDRAARTG HHHHHHHHCCCCCCHHHHHHHHHHCCEECCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA