Click here to switch to the map view.

The map label for this gene is phnR [H]

Identifier: 21244257

GI number: 21244257

Start: 4176196

End: 4176924

Strand: Direct

Name: phnR [H]

Synonym: XAC3532

Alternate gene names: 21244257

Gene position: 4176196-4176924 (Clockwise)

Preceding gene: 21244256

Following gene: 21244277

Centisome position: 80.69

GC content: 66.26

Gene sequence:

>729_bases
ATGAGCGTGTCGCGCCAACACACCATCACCGAAGCGATCTCCGCGCAAATTTCAGCCGGCGAATGGGGACCGGATCAACG
CCTGCCGGTGGAACGCGCATTGGCCGAGCGATTCGCCTGCACCCGCATCACGCTGCGCGAAGCGCTGCAGCAGCTTGAAG
CCGAAGGCCGCATCTACCGCGAAAACCGCCGCGGCTGGTTCGTCAGCGCGCCGCGCGTGCGCTACGACCCTACCAGCATC
GCCGGTTTCATGCAGTACGTGGCGGCGCAAGGACGCAAGCCGCGCACCGAATTATTGAGCGCCACCCGGCAGGTTGCAGG
CACGGCTTACGCCGCGGCGTTGCGACTGGACAGCCCGTACGACGAGGTGTTCGTCCTGCAGCGTCGGCGCTGGATCGACC
GCCGCGCAGTCCTGCTGGAAACCAATGTGGTGCTCGCGGCCTGGGCGCCGGGCCTGCTCGAACACGATCTGGCCGGATCG
CTGTCGAGCGTGTTCAACCAGCGGCTGGGCCTGTTCCTGAGCCGCGCACAGCTGTCGATGCATCCGGCCGGATTGGACGC
GACACAGGCGCTGCTGCTGCAGTCCACTCCCGGCACACCGTGCTTTCGGCTGCAGCGGATCAGCTTTGCCGAAGACGGCC
GCGCGGTAGAGCTGGATATCGAATCCTGGCGCCACGACGCATTGGATGTGGTGGTGCGGACCGAGGCGCCGACGCGGTCT
GCTTTTTAG

Upstream 100 bases:

>100_bases
TCGCGGTTTGCGAGCGCGTTCTTCTTTACCATCGCAACATGCATGCCTTCCACCTCATTGCCTTGCTCACGCCCTGCGTC
TTCCGTCTGCGGTTCGCCGC

Downstream 100 bases:

>100_bases
GGTCGGGAATCGGGAATCGTTGAGGAGCCTGCCGCATTGCTGCGTTCGTGGTACGCGCGGCTTTGCTGCCGCCTCGGTGT
CATCAACAGCGGATTCGAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSVSRQHTITEAISAQISAGEWGPDQRLPVERALAERFACTRITLREALQQLEAEGRIYRENRRGWFVSAPRVRYDPTSI
AGFMQYVAAQGRKPRTELLSATRQVAGTAYAAALRLDSPYDEVFVLQRRRWIDRRAVLLETNVVLAAWAPGLLEHDLAGS
LSSVFNQRLGLFLSRAQLSMHPAGLDATQALLLQSTPGTPCFRLQRISFAEDGRAVELDIESWRHDALDVVVRTEAPTRS
AF

Sequences:

>Translated_242_residues
MSVSRQHTITEAISAQISAGEWGPDQRLPVERALAERFACTRITLREALQQLEAEGRIYRENRRGWFVSAPRVRYDPTSI
AGFMQYVAAQGRKPRTELLSATRQVAGTAYAAALRLDSPYDEVFVLQRRRWIDRRAVLLETNVVLAAWAPGLLEHDLAGS
LSSVFNQRLGLFLSRAQLSMHPAGLDATQALLLQSTPGTPCFRLQRISFAEDGRAVELDIESWRHDALDVVVRTEAPTRS
AF
>Mature_241_residues
SVSRQHTITEAISAQISAGEWGPDQRLPVERALAERFACTRITLREALQQLEAEGRIYRENRRGWFVSAPRVRYDPTSIA
GFMQYVAAQGRKPRTELLSATRQVAGTAYAAALRLDSPYDEVFVLQRRRWIDRRAVLLETNVVLAAWAPGLLEHDLAGSL
SSVFNQRLGLFLSRAQLSMHPAGLDATQALLLQSTPGTPCFRLQRISFAEDGRAVELDIESWRHDALDVVVRTEAPTRSA
F

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=210, Percent_Identity=29.0476190476191, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI87082252, Length=212, Percent_Identity=23.1132075471698, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790118, Length=213, Percent_Identity=23.4741784037559, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788418, Length=220, Percent_Identity=26.8181818181818, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27117; Mature: 26986

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSRQHTITEAISAQISAGEWGPDQRLPVERALAERFACTRITLREALQQLEAEGRIYR
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
ENRRGWFVSAPRVRYDPTSIAGFMQYVAAQGRKPRTELLSATRQVAGTAYAAALRLDSPY
ECCCCEEEECCCEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCH
DEVFVLQRRRWIDRRAVLLETNVVLAAWAPGLLEHDLAGSLSSVFNQRLGLFLSRAQLSM
HHHHHHHHHHHHHHHEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HPAGLDATQALLLQSTPGTPCFRLQRISFAEDGRAVELDIESWRHDALDVVVRTEAPTRS
CCCCCCHHHHHEEECCCCCCCCEEEECCCCCCCCEEEEEHHHHCCCCEEEEEECCCCCCC
AF
CC
>Mature Secondary Structure 
SVSRQHTITEAISAQISAGEWGPDQRLPVERALAERFACTRITLREALQQLEAEGRIYR
CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
ENRRGWFVSAPRVRYDPTSIAGFMQYVAAQGRKPRTELLSATRQVAGTAYAAALRLDSPY
ECCCCEEEECCCEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCH
DEVFVLQRRRWIDRRAVLLETNVVLAAWAPGLLEHDLAGSLSSVFNQRLGLFLSRAQLSM
HHHHHHHHHHHHHHHEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HPAGLDATQALLLQSTPGTPCFRLQRISFAEDGRAVELDIESWRHDALDVVVRTEAPTRS
CCCCCCHHHHHEEECCCCCCCCEEEECCCCCCCCEEEEEHHHHCCCCEEEEEECCCCCCC
AF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA