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The map label for this gene is ycfQ [C]

Identifier: 21244186

GI number: 21244186

Start: 4086091

End: 4086744

Strand: Direct

Name: ycfQ [C]

Synonym: XAC3461

Alternate gene names: 21244186

Gene position: 4086091-4086744 (Clockwise)

Preceding gene: 21244184

Following gene: 21244187

Centisome position: 78.95

GC content: 64.22

Gene sequence:

>654_bases
ATGTCCAGCTCGTCCCCTCTCAATTCCAAGACCAAGAGCAACGGCCCTGGTCGTCCCAAGGATCTTGGAAAGCGTGCCGC
CATCCTCGGTGCCGCCCGCACCATGTTCATGGAGCAGGGCTATGCAGGGGTCAGCATGGATGGGATCGCCGCACAGGCCG
GCGTCTCCAAACTGACCGTGTACAGCCACTTCGGCGACAAGGAGAGCCTGTTTTCCGAGGCGATCCGCGCACAGTGCCAG
CACATGATGCCGGACGACCTGTTCGATCACGCGCCCAAGGGCGCATTGCGCGACCAGCTCACCGAGATCGCCCATGCGTT
CTTCGCCATGGTCAGCACCGAATCGGCCATCTCCACCCACCGCATGATGATGGCGCCGGGGACCGGCGACGTGCATATCC
GCGAGATGTTCTGGGATGCAGGCCCCAAGCGCACGCAGCGGGCGCTGGCGGATTTCCTGTCTGCACGGGTGGCCGACGGC
CAGCTGGAGATCCCGGACGTCGCACGCGCCGCCTCGCAATTCTTCTGCCTGCTCAAGGGCGAGCTCTACGCCTTGATGAT
GTGCGGCCTGCACGGCCAGCCCACCCGCGCCCAGGTCAATGAGCACATCGACACCAGCGTGGACTTCTTTTTGAGGGCCT
ATGCGCCGCGCTGA

Upstream 100 bases:

>100_bases
CGGGAGCGGCACGACACCGGGAACCGGGCAGACGGAACCGTTAACGTACCGGTTCGGCGCCGAGTATAAATATAGAACCC
GATGGTCTAGTATTGACGGC

Downstream 100 bases:

>100_bases
GCGCCCCCGGCCTTTGGTGGCGATGACTTCCGGCACTGCGCCGGATGCCAGCGCGCGGCGATGCTAGATGCGCCAGGTGC
CTCGCGCACCGGTAAAATGT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator Protein; Bacterial Regulatory Protein; TetR-Type Transcriptional Regulator; TetR-Family Trancriptional Regulatory Protein; Transcriptional Regulator Protein TetR Family; TetR-Like Virulence Regulator; TetR Family Transcriptional RegulatoR; Regulatory Protein Tetr; Calsymin Transcriptional Regulator; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; Bacterial Regulatory Protein TetR Family Protein; Transcription Regulator Protein Tetr Family; TetR Family Regulatory Protein; Transcription Regulator Protein TetR Family; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSSSSPLNSKTKSNGPGRPKDLGKRAAILGAARTMFMEQGYAGVSMDGIAAQAGVSKLTVYSHFGDKESLFSEAIRAQCQ
HMMPDDLFDHAPKGALRDQLTEIAHAFFAMVSTESAISTHRMMMAPGTGDVHIREMFWDAGPKRTQRALADFLSARVADG
QLEIPDVARAASQFFCLLKGELYALMMCGLHGQPTRAQVNEHIDTSVDFFLRAYAPR

Sequences:

>Translated_217_residues
MSSSSPLNSKTKSNGPGRPKDLGKRAAILGAARTMFMEQGYAGVSMDGIAAQAGVSKLTVYSHFGDKESLFSEAIRAQCQ
HMMPDDLFDHAPKGALRDQLTEIAHAFFAMVSTESAISTHRMMMAPGTGDVHIREMFWDAGPKRTQRALADFLSARVADG
QLEIPDVARAASQFFCLLKGELYALMMCGLHGQPTRAQVNEHIDTSVDFFLRAYAPR
>Mature_216_residues
SSSSPLNSKTKSNGPGRPKDLGKRAAILGAARTMFMEQGYAGVSMDGIAAQAGVSKLTVYSHFGDKESLFSEAIRAQCQH
MMPDDLFDHAPKGALRDQLTEIAHAFFAMVSTESAISTHRMMMAPGTGDVHIREMFWDAGPKRTQRALADFLSARVADGQ
LEIPDVARAASQFFCLLKGELYALMMCGLHGQPTRAQVNEHIDTSVDFFLRAYAPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23687; Mature: 23556

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSSPLNSKTKSNGPGRPKDLGKRAAILGAARTMFMEQGYAGVSMDGIAAQAGVSKLTV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHEEH
YSHFGDKESLFSEAIRAQCQHMMPDDLFDHAPKGALRDQLTEIAHAFFAMVSTESAISTH
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RMMMAPGTGDVHIREMFWDAGPKRTQRALADFLSARVADGQLEIPDVARAASQFFCLLKG
HEEECCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ELYALMMCGLHGQPTRAQVNEHIDTSVDFFLRAYAPR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSSSPLNSKTKSNGPGRPKDLGKRAAILGAARTMFMEQGYAGVSMDGIAAQAGVSKLTV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHEEH
YSHFGDKESLFSEAIRAQCQHMMPDDLFDHAPKGALRDQLTEIAHAFFAMVSTESAISTH
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RMMMAPGTGDVHIREMFWDAGPKRTQRALADFLSARVADGQLEIPDVARAASQFFCLLKG
HEEECCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ELYALMMCGLHGQPTRAQVNEHIDTSVDFFLRAYAPR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA