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The map label for this gene is ybhD [C]

Identifier: 21244184

GI number: 21244184

Start: 4081746

End: 4082630

Strand: Direct

Name: ybhD [C]

Synonym: XAC3459

Alternate gene names: 21244184

Gene position: 4081746-4082630 (Clockwise)

Preceding gene: 21244180

Following gene: 21244186

Centisome position: 78.87

GC content: 67.12

Gene sequence:

>885_bases
ATGGACCTGGCGAGCCTCAATGCCTTCGTGGCGATCGCCGAGAGCGGCAGCTTTTCGGCAGCCGGCGAGGCCTTGCACCT
GACCCAGCCAGCGGTGAGCAAACGCATCGCCCTCCTGGAAGCGCAATTGTCGGCGCGGCTGTTCGATCGCCTGGGCCGGC
AGGTGGTGCTGACCGAAGCCGGACAGGCGTTGCTGCCGCGCGCGCAACGCATCCTGGCCGAGCTGCACGACACCCGCCGC
GTGCTGGAACATTTGGGCGCAGCCGTTGGCGGCCGCTTGAGTCTGGCCACCAGCCACCATGTGGGTCTGCACCGCCTGCC
GGCCTTGTTGCGCGGTTTTGCCACGCGACATCCGCAGGCGGCGTTGGACATCCAGTTCCTGGATTCGGAGTTGGCGTACG
CCGCGGTGCTGCGCGGGGAGGTGGAACTGGCAGTGACAACCCTGGCACCGGACACGCGCGCTCCGCTGCGCGCGCAGCCG
ATCTGGCATGACCGCTTGCAGTTCGTGGTTGCACCCGACCACCCGTTGGCAGCACTGCCTGCGGTGTCGCTGGACGATGT
GGTGACGCACCCGGCGGTATTGCCCGATCCGGGCACCTTCACCCATCGCATCGTTGCCAACCTGTTCGCCGAGCGCGGTC
TGGTGCCGAGTCTGCGCATGACCACCAATTACCTGGAAACGATCAAGATGCTGGTGTCGGTGGGCCTGGCGTGGAGCGTG
CTGCCCGAGCGCATGATCGACCATCAGATCGTGGCGCTGCCGCTGGCCGATGTCGCGTTATCCCGCGAGCTGGGTTGCGT
CACCCATGGCGGGCGCACCTTGTCGCGTGCTGCGCAGGCATTTGTGGCGTTGTTGCACGGGCAGGCGGATCTGGCGCAGG
CGTAG

Upstream 100 bases:

>100_bases
ATGGTAGGTGCGCCCACCTGGCTGAGATCGATGCTAGGAGCTTGCCTTGGATTACGCAAATTCATATTGTTTATTCAAGA
AATGAATTTTAGGAATAGCA

Downstream 100 bases:

>100_bases
GCTGCGGGCGATATGTCTGCAGCGTGCCGCACGCGTCGGCGAAAGATGACGTCAGCCGGTCGATCTCGGCACGACCGCAT
GGGAAGTGCGATGCGTCATG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDLASLNAFVAIAESGSFSAAGEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEAGQALLPRAQRILAELHDTRR
VLEHLGAAVGGRLSLATSHHVGLHRLPALLRGFATRHPQAALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQP
IWHDRLQFVVAPDHPLAALPAVSLDDVVTHPAVLPDPGTFTHRIVANLFAERGLVPSLRMTTNYLETIKMLVSVGLAWSV
LPERMIDHQIVALPLADVALSRELGCVTHGGRTLSRAAQAFVALLHGQADLAQA

Sequences:

>Translated_294_residues
MDLASLNAFVAIAESGSFSAAGEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEAGQALLPRAQRILAELHDTRR
VLEHLGAAVGGRLSLATSHHVGLHRLPALLRGFATRHPQAALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQP
IWHDRLQFVVAPDHPLAALPAVSLDDVVTHPAVLPDPGTFTHRIVANLFAERGLVPSLRMTTNYLETIKMLVSVGLAWSV
LPERMIDHQIVALPLADVALSRELGCVTHGGRTLSRAAQAFVALLHGQADLAQA
>Mature_294_residues
MDLASLNAFVAIAESGSFSAAGEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEAGQALLPRAQRILAELHDTRR
VLEHLGAAVGGRLSLATSHHVGLHRLPALLRGFATRHPQAALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQP
IWHDRLQFVVAPDHPLAALPAVSLDDVVTHPAVLPDPGTFTHRIVANLFAERGLVPSLRMTTNYLETIKMLVSVGLAWSV
LPERMIDHQIVALPLADVALSRELGCVTHGGRTLSRAAQAFVALLHGQADLAQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=27.7777777777778, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787530, Length=264, Percent_Identity=28.030303030303, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=30.6620209059233, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=30.8016877637131, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=29.4117647058824, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788748, Length=302, Percent_Identity=27.8145695364238, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=29.020979020979, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790208, Length=296, Percent_Identity=27.7027027027027, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787601, Length=264, Percent_Identity=25.7575757575758, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082132, Length=294, Percent_Identity=24.1496598639456, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788296, Length=225, Percent_Identity=28, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790399, Length=300, Percent_Identity=24, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87081904, Length=292, Percent_Identity=26.027397260274, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790262, Length=248, Percent_Identity=26.6129032258064, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367136, Length=251, Percent_Identity=28.2868525896414, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786508, Length=180, Percent_Identity=28.3333333333333, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788887, Length=275, Percent_Identity=28.7272727272727, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787806, Length=291, Percent_Identity=25.085910652921, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786713, Length=266, Percent_Identity=27.0676691729323, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789506, Length=283, Percent_Identity=22.6148409893993, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788626, Length=250, Percent_Identity=28.8, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=95, Percent_Identity=35.7894736842105, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787949, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787128, Length=129, Percent_Identity=31.7829457364341, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1 [H]

EC number: NA

Molecular weight: Translated: 31566; Mature: 31566

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLASLNAFVAIAESGSFSAAGEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEA
CCCCCCCEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GQALLPRAQRILAELHDTRRVLEHLGAAVGGRLSLATSHHVGLHRLPALLRGFATRHPQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCH
ALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQPIWHDRLQFVVAPDHPLAALP
HEEHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCHHCCEEEEECCCCCCHHCC
AVSLDDVVTHPAVLPDPGTFTHRIVANLFAERGLVPSLRMTTNYLETIKMLVSVGLAWSV
CCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LPERMIDHQIVALPLADVALSRELGCVTHGGRTLSRAAQAFVALLHGQADLAQA
HHHHHHCCHHEEHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MDLASLNAFVAIAESGSFSAAGEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLTEA
CCCCCCCEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GQALLPRAQRILAELHDTRRVLEHLGAAVGGRLSLATSHHVGLHRLPALLRGFATRHPQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCH
ALDIQFLDSELAYAAVLRGEVELAVTTLAPDTRAPLRAQPIWHDRLQFVVAPDHPLAALP
HEEHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCHHCCEEEEECCCCCCHHCC
AVSLDDVVTHPAVLPDPGTFTHRIVANLFAERGLVPSLRMTTNYLETIKMLVSVGLAWSV
CCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LPERMIDHQIVALPLADVALSRELGCVTHGGRTLSRAAQAFVALLHGQADLAQA
HHHHHHCCHHEEHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9108283 [H]