| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is cysJ [H]
Identifier: 21244055
GI number: 21244055
Start: 3922907
End: 3924754
Strand: Direct
Name: cysJ [H]
Synonym: XAC3330
Alternate gene names: 21244055
Gene position: 3922907-3924754 (Clockwise)
Preceding gene: 21244050
Following gene: 21244056
Centisome position: 75.8
GC content: 69.16
Gene sequence:
>1848_bases ATGACCGCCGCCAGTTCCGCGCTACCGCCCAGCCCCTTGCCCGACGAGCGCAAGGTGCTGCTGGACCGGTTGGTCGACGG CCTGGACACCGCATCGCTGTGGTGGCTGTCCGGCTACGCTGCCGGGCTGGCGCAGGGCCATCCGCCGCGCTCGCTGGCGG TGTTGCCGGGCGGACAGGCGCACCCACTCGCCCAGGAAGGCCAACGCCTGACCGTGGTGTACGGCAGCCAGACCGGCAAT GCCCGTCGCGAGGCAGAGCACCTAGCCGCCGAGGCCGAAGCCGCGGGTCTGAGCGTGCGCCTGGTGCGCGCCGACGCCTA CCCCACCCGCGAGCTGGCCAGTGAGCGGCTGTTGTATGTGGTGATCAGCACCCAGGGCGAAGGTGACCCGCCAGACGATG CGATCGGCCTGGTGGAATTCCTGAGCAGCCGGCGCGCGCCTAAGGTGCCCGAGCTCAAGTACGCGGTCCTGGGCCTGGGC GATTCCAGTTATGCCGATTTCTGCGGTATTGCCCGGCGCATCGACGAGCGCCTGGCCGAACTGGGCGGCAGCCGCGTGCA GCCGCGCGGCGAAGCCGATCTGGACATCGACAGCGTTGCCCTGCCGTGGCGCGCACAGGCGCTCACGCATGCGCGCGAGC AGCTCAAGGGCGGCCTGCACTCGGCCACGGTCACGCCGCTGCGCAGCAGCCCGGCCACGCCGGTGTGGTCGCACCAGCAG CCGTTCGCCGCCGAGTTGTTGTCCAATCAGATCATCAGCGGACGCGACTTCAAGGGCCCGGGATTTCGCGTCTATGCGGC GCCCGGCAAGCGCGTGCGGCATCTGGAATTTTCGCTGCAAGGCAGCGGCCTGAGCTATGAGCCGGGCGACGCGCTGGGCA TCCGCCACCGCAATCCGCCCGCATTGGTCGATGCGGTGCTGCAGACCTTGCGGTTGGACGGCGATGCCGCGGTCACCATC GGCGAGCAGACATTGGAATTGCATGCATGGCTCGCCACCCAGCGCGAACTGACCAAGCTGTCGCGGCCGTTCCTCACCGC ACATGCCGAGCGCGCAGGCGCGCAAGAACTGCAAGCGCTGCTCGCCCCCACCCAGACTGCCGGCCTGGCGTCGCTGCTCG CCGATCATCAAGTGATCGACGTGCTGCGCCGCTGGCCGGCGGATTGGGACCACGCCGGCCTGCTCGCCGCGCTGCGTCCC CTCACCCCGCGGCTGTACTCCGTCGCCTCCAGCCGCAAGCGCGTGGGCGATGAAGTGCATCTGACCGTGGACGAGGTCAC CTACCAGGCGCATGGGCATGCGCATCTGGGTGCGGCCAGCGGCTTTCTGGCCGCGCTTGGCGAAGGCGACACCGCGCCGG TCTACATCGAACCGAACGAGCGCTTCCGGGTACCGGCCGATGCCGATCGCGACATCCTGATGATCGGCCCGGGCACCGGC GTGGCGCCGTTCCGCGGCTTCGTGCAGGAGCGCGCGGAAACCGGCGCCAAGGGCCGTAACTGGCTGTTCTTCGGCGCCCA GCATTTCAATACCGATTTCCTGTACCAGGCCGAATGGCAGCTGGCCCTGCGACGCGGCGAGTTGCACGCGCTGGATCTGG CGTTCTCGCGCGACCAGGCCGAAAAGCTCTACGTGCAACATCGCCTGCGCGCGCGTGGCGCCGAGGTCTATGCCTGGCTG CAGGGCGGCGCGCACGTGTATGTGTGCGGCGCCACCAGCATGGGCAAGGACGTGCATGCGGCCCTGCTCGACATCGTCGC CACCCACGGCGCCCAGGATGCCGAGGCCGCCGCCGCGTATCTCACCCAACTGCAGGTGGAGGGACGCTATGCACGGGATG TCTATTAG
Upstream 100 bases:
>100_bases CGAAATAAGCGCCCGGCATAACGCGATAACGGCAATTCCTTTCTGGTGGGCGCAACGCTTCCCTAACATCGTCACTCTCA TCACCCCCCCCCGGATCCGA
Downstream 100 bases:
>100_bases TGCCGGGAATCGCGAGTGGGGAATCGGGAATGGGAAGAGCCCATGTCCGAGTTCTTCCGACCAACTGCGCCGCTTTTCAC GATTCCCCATTCCCGATTCT
Product: NADPH-sulfite reductase flavoprotein subunit
Products: NA
Alternate protein names: SiR-FP [H]
Number of amino acids: Translated: 615; Mature: 614
Protein sequence:
>615_residues MTAASSALPPSPLPDERKVLLDRLVDGLDTASLWWLSGYAAGLAQGHPPRSLAVLPGGQAHPLAQEGQRLTVVYGSQTGN ARREAEHLAAEAEAAGLSVRLVRADAYPTRELASERLLYVVISTQGEGDPPDDAIGLVEFLSSRRAPKVPELKYAVLGLG DSSYADFCGIARRIDERLAELGGSRVQPRGEADLDIDSVALPWRAQALTHAREQLKGGLHSATVTPLRSSPATPVWSHQQ PFAAELLSNQIISGRDFKGPGFRVYAAPGKRVRHLEFSLQGSGLSYEPGDALGIRHRNPPALVDAVLQTLRLDGDAAVTI GEQTLELHAWLATQRELTKLSRPFLTAHAERAGAQELQALLAPTQTAGLASLLADHQVIDVLRRWPADWDHAGLLAALRP LTPRLYSVASSRKRVGDEVHLTVDEVTYQAHGHAHLGAASGFLAALGEGDTAPVYIEPNERFRVPADADRDILMIGPGTG VAPFRGFVQERAETGAKGRNWLFFGAQHFNTDFLYQAEWQLALRRGELHALDLAFSRDQAEKLYVQHRLRARGAEVYAWL QGGAHVYVCGATSMGKDVHAALLDIVATHGAQDAEAAAAYLTQLQVEGRYARDVY
Sequences:
>Translated_615_residues MTAASSALPPSPLPDERKVLLDRLVDGLDTASLWWLSGYAAGLAQGHPPRSLAVLPGGQAHPLAQEGQRLTVVYGSQTGN ARREAEHLAAEAEAAGLSVRLVRADAYPTRELASERLLYVVISTQGEGDPPDDAIGLVEFLSSRRAPKVPELKYAVLGLG DSSYADFCGIARRIDERLAELGGSRVQPRGEADLDIDSVALPWRAQALTHAREQLKGGLHSATVTPLRSSPATPVWSHQQ PFAAELLSNQIISGRDFKGPGFRVYAAPGKRVRHLEFSLQGSGLSYEPGDALGIRHRNPPALVDAVLQTLRLDGDAAVTI GEQTLELHAWLATQRELTKLSRPFLTAHAERAGAQELQALLAPTQTAGLASLLADHQVIDVLRRWPADWDHAGLLAALRP LTPRLYSVASSRKRVGDEVHLTVDEVTYQAHGHAHLGAASGFLAALGEGDTAPVYIEPNERFRVPADADRDILMIGPGTG VAPFRGFVQERAETGAKGRNWLFFGAQHFNTDFLYQAEWQLALRRGELHALDLAFSRDQAEKLYVQHRLRARGAEVYAWL QGGAHVYVCGATSMGKDVHAALLDIVATHGAQDAEAAAAYLTQLQVEGRYARDVY >Mature_614_residues TAASSALPPSPLPDERKVLLDRLVDGLDTASLWWLSGYAAGLAQGHPPRSLAVLPGGQAHPLAQEGQRLTVVYGSQTGNA RREAEHLAAEAEAAGLSVRLVRADAYPTRELASERLLYVVISTQGEGDPPDDAIGLVEFLSSRRAPKVPELKYAVLGLGD SSYADFCGIARRIDERLAELGGSRVQPRGEADLDIDSVALPWRAQALTHAREQLKGGLHSATVTPLRSSPATPVWSHQQP FAAELLSNQIISGRDFKGPGFRVYAAPGKRVRHLEFSLQGSGLSYEPGDALGIRHRNPPALVDAVLQTLRLDGDAAVTIG EQTLELHAWLATQRELTKLSRPFLTAHAERAGAQELQALLAPTQTAGLASLLADHQVIDVLRRWPADWDHAGLLAALRPL TPRLYSVASSRKRVGDEVHLTVDEVTYQAHGHAHLGAASGFLAALGEGDTAPVYIEPNERFRVPADADRDILMIGPGTGV APFRGFVQERAETGAKGRNWLFFGAQHFNTDFLYQAEWQLALRRGELHALDLAFSRDQAEKLYVQHRLRARGAEVYAWLQ GGAHVYVCGATSMGKDVHAALLDIVATHGAQDAEAAAAYLTQLQVEGRYARDVY
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow f
COG id: COG0369
COG function: function code P; Sulfite reductase, alpha subunit (flavoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 flavodoxin-like domain [H]
Homologues:
Organism=Homo sapiens, GI127139033, Length=618, Percent_Identity=28.4789644012945, Blast_Score=221, Evalue=2e-57, Organism=Homo sapiens, GI7657393, Length=612, Percent_Identity=31.6993464052288, Blast_Score=215, Evalue=8e-56, Organism=Homo sapiens, GI24041029, Length=604, Percent_Identity=31.4569536423841, Blast_Score=214, Evalue=2e-55, Organism=Homo sapiens, GI221316709, Length=612, Percent_Identity=31.6993464052288, Blast_Score=212, Evalue=7e-55, Organism=Homo sapiens, GI221316705, Length=621, Percent_Identity=31.2399355877617, Blast_Score=208, Evalue=1e-53, Organism=Homo sapiens, GI221316707, Length=537, Percent_Identity=32.0297951582868, Blast_Score=201, Evalue=2e-51, Organism=Homo sapiens, GI40254422, Length=656, Percent_Identity=28.3536585365854, Blast_Score=167, Evalue=4e-41, Organism=Homo sapiens, GI10835173, Length=649, Percent_Identity=25.57781201849, Blast_Score=152, Evalue=9e-37, Organism=Homo sapiens, GI169790956, Length=402, Percent_Identity=28.3582089552239, Blast_Score=130, Evalue=5e-30, Organism=Homo sapiens, GI169790958, Length=402, Percent_Identity=28.3582089552239, Blast_Score=129, Evalue=6e-30, Organism=Escherichia coli, GI1789123, Length=621, Percent_Identity=42.512077294686, Blast_Score=454, Evalue=1e-129, Organism=Caenorhabditis elegans, GI17554134, Length=610, Percent_Identity=28.0327868852459, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI17566446, Length=592, Percent_Identity=26.1824324324324, Blast_Score=129, Evalue=5e-30, Organism=Caenorhabditis elegans, GI17531441, Length=390, Percent_Identity=26.6666666666667, Blast_Score=97, Evalue=4e-20, Organism=Caenorhabditis elegans, GI32563863, Length=125, Percent_Identity=38.4, Blast_Score=83, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6321832, Length=643, Percent_Identity=27.2161741835148, Blast_Score=176, Evalue=1e-44, Organism=Saccharomyces cerevisiae, GI6321143, Length=372, Percent_Identity=28.2258064516129, Blast_Score=130, Evalue=7e-31, Organism=Drosophila melanogaster, GI17137192, Length=624, Percent_Identity=28.525641025641, Blast_Score=205, Evalue=6e-53, Organism=Drosophila melanogaster, GI24582192, Length=526, Percent_Identity=26.615969581749, Blast_Score=172, Evalue=8e-43, Organism=Drosophila melanogaster, GI24660907, Length=584, Percent_Identity=28.7671232876712, Blast_Score=167, Evalue=2e-41, Organism=Drosophila melanogaster, GI24660903, Length=584, Percent_Identity=28.7671232876712, Blast_Score=167, Evalue=2e-41, Organism=Drosophila melanogaster, GI24583543, Length=665, Percent_Identity=26.7669172932331, Blast_Score=166, Evalue=6e-41, Organism=Drosophila melanogaster, GI78706876, Length=665, Percent_Identity=26.7669172932331, Blast_Score=166, Evalue=6e-41, Organism=Drosophila melanogaster, GI78706872, Length=662, Percent_Identity=26.7371601208459, Blast_Score=166, Evalue=6e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010199 - InterPro: IPR003097 - InterPro: IPR017927 - InterPro: IPR001094 - InterPro: IPR008254 - InterPro: IPR001709 - InterPro: IPR023173 - InterPro: IPR001433 - InterPro: IPR017938 [H]
Pfam domain/function: PF00667 FAD_binding_1; PF00258 Flavodoxin_1; PF00175 NAD_binding_1 [H]
EC number: =1.8.1.2 [H]
Molecular weight: Translated: 66559; Mature: 66427
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50902 FLAVODOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAASSALPPSPLPDERKVLLDRLVDGLDTASLWWLSGYAAGLAQGHPPRSLAVLPGGQA CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC HPLAQEGQRLTVVYGSQTGNARREAEHLAAEAEAAGLSVRLVRADAYPTRELASERLLYV CCHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCEEEE VISTQGEGDPPDDAIGLVEFLSSRRAPKVPELKYAVLGLGDSSYADFCGIARRIDERLAE EEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH LGGSRVQPRGEADLDIDSVALPWRAQALTHAREQLKGGLHSATVTPLRSSPATPVWSHQQ HCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCC PFAAELLSNQIISGRDFKGPGFRVYAAPGKRVRHLEFSLQGSGLSYEPGDALGIRHRNPP CHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCH ALVDAVLQTLRLDGDAAVTIGEQTLELHAWLATQRELTKLSRPFLTAHAERAGAQELQAL HHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH LAPTQTAGLASLLADHQVIDVLRRWPADWDHAGLLAALRPLTPRLYSVASSRKRVGDEVH HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE LTVDEVTYQAHGHAHLGAASGFLAALGEGDTAPVYIEPNERFRVPADADRDILMIGPGTG EEEEHEEEECCCCEECCHHHHHHHCCCCCCCCCEEECCCCCEECCCCCCCCEEEECCCCC VAPFRGFVQERAETGAKGRNWLFFGAQHFNTDFLYQAEWQLALRRGELHALDLAFSRDQA CHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCEEEEHHHHHHHHCCCEEEEEEECCHHHH EKLYVQHRLRARGAEVYAWLQGGAHVYVCGATSMGKDVHAALLDIVATHGAQDAEAAAAY HHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH LTQLQVEGRYARDVY HHHHHCCCCHHCCCC >Mature Secondary Structure TAASSALPPSPLPDERKVLLDRLVDGLDTASLWWLSGYAAGLAQGHPPRSLAVLPGGQA CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC HPLAQEGQRLTVVYGSQTGNARREAEHLAAEAEAAGLSVRLVRADAYPTRELASERLLYV CCHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCEEEE VISTQGEGDPPDDAIGLVEFLSSRRAPKVPELKYAVLGLGDSSYADFCGIARRIDERLAE EEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH LGGSRVQPRGEADLDIDSVALPWRAQALTHAREQLKGGLHSATVTPLRSSPATPVWSHQQ HCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCC PFAAELLSNQIISGRDFKGPGFRVYAAPGKRVRHLEFSLQGSGLSYEPGDALGIRHRNPP CHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCH ALVDAVLQTLRLDGDAAVTIGEQTLELHAWLATQRELTKLSRPFLTAHAERAGAQELQAL HHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH LAPTQTAGLASLLADHQVIDVLRRWPADWDHAGLLAALRPLTPRLYSVASSRKRVGDEVH HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE LTVDEVTYQAHGHAHLGAASGFLAALGEGDTAPVYIEPNERFRVPADADRDILMIGPGTG EEEEHEEEECCCCEECCHHHHHHHCCCCCCCCCEEECCCCCEECCCCCCCCEEEECCCCC VAPFRGFVQERAETGAKGRNWLFFGAQHFNTDFLYQAEWQLALRRGELHALDLAFSRDQA CHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCEEEEHHHHHHHHCCCEEEEEEECCHHHH EKLYVQHRLRARGAEVYAWLQGGAHVYVCGATSMGKDVHAALLDIVATHGAQDAEAAAAY HHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH LTQLQVEGRYARDVY HHHHHCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA