| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is gcd [H]
Identifier: 21243938
GI number: 21243938
Start: 3783597
End: 3786074
Strand: Direct
Name: gcd [H]
Synonym: XAC3212
Alternate gene names: 21243938
Gene position: 3783597-3786074 (Clockwise)
Preceding gene: 21243937
Following gene: 21243939
Centisome position: 73.11
GC content: 67.31
Gene sequence:
>2478_bases ATGACTGATCAATCCTCAAAACGTGGGCTAGGCACCTGGTTGCTGGTGGCCTATGCCGTGGTGATCGCCGTGCTTGGCGC GGTGCTCGCCTACCAGGGCGGCCGCCTGGTGGCCGTGGGCGGCTCCTGGTATTACCTGATCGCGGGTATTGCCCTGTTCC TGGCGGGCGTCCTGCTCGCGCTGGGCAAGCGCGCCGGGCTGTGGCTGTTTGGCGCCACGCTGGCCGGTACCATCGCCTGG GCGCTGTGGGAAGTGGGCCTGGATGGCTGGGGCTTGGTGCCGCGCCTGGCCATGATGTCGGTGCTGGGGCTGGTGCTGCT GCCGTTCTGGGGGGTGGCGCGTCGTCGCATGCAGCCGTTGTCCGGCCTGAGCTATGCGCTGGTGACCGGCGTGCTGCCAA TCCTGGGCGCCGCGCTGATCCTGTGGCCGCTGCTGATGCCGCGCAATGTCGAGCTGGCCGATGCCTCCAAGTTGCCGGCC GACAGCGCCACGGCCTTCAGCCGCGGCACCGTGCCCAGCCCCGACGGCAACGTCGCGGCCAATCATGACGCCAGCAACTG GACCTCCTATGCGGGTTCCAACCTGTCCAACCACTACACGCCCGGCGCGCAGATCACGCCGGACAACGTGAAGAATCTCA AGGTGGCCTGGGAATTCCACACCGGCGACCTCAAGCCCAAGGACTCCAAGCTGGGCTACGCCTTCCAGAACACCCCGCTC AAGGTCGGCGACCTGCTCTACATCTGTACCCCCACCCAGAAAGTGATCGCGGTGGAAGCGGCCAACGGCAAGGAGCGCTG GCGCTTCGATCCGCAGACCAACCCAAAGGCGATGGCGGGCGTGGCTGCCACCACCTGCCGTGGCGTGTCGTACTACCAGG CGCCCGAAGGCACCGCCGAGTGCCCGACCCGGATCTTCTGGCCGATGGTCGATGGCCGCCTCGGCGCGCTGGATGCGCAG ACCGGCAAGCTGTGCACCAGCTTCGGCAACAACGGCTATGTCGATCTGAATGCGGGCACCGGCAACACCAAGCCGGGCTT CGTCGGCCCCACCTCGCCGCCGGTGGTGATGCGTGGTGTGGTGATCCAGCCGACCGGCCAGGTCCGCGATGGTCAGGAAG GCGATGCGCCGTCCGGCGTGGTGCGTGGCTTCGATGCGCTCACCGGCCAGCTGCGCTGGGCCTGGGACCTGGGCAACCCG GCGATCACCGCCGAGCCGCCGGCCGGCCAGACCTACACGCGCTCAACCCCGAACGTATGGTCGCTGATGGCCGCCGACGA CGAGCTGGGCCTGGTCTATCTGCCCACCGGCAATGCATCCGGCGACTTCTTCGGCAAGGGCCGCACCCCGCAGGACGAGG AATACACCGCCTCGCTGGTTGCGGTGGATGCCGCCACCGGCAAGGAACGCTGGCACTTCCGTACCGTCAACCACGACCTG TGGGACTACGACATCGGCCCGCAGCCGAACCTGGTCGATTGGCCGGTCGCTGGCGGCGGCACGCGTACTGCGGTGATCCA GGCCACCAAGTCCGGCCAGGTGTTCGTGCTGGACCGCGCCACCGGCGAGCCGATCATGCCGGTCAAGCAGATTCCGGTAC CGCAGGGAACCGACCACGGCGACTGGACCGCCGCCACGCAACCGATCTCGCCGGGCATGCCCAACACCGTGGGCGCGCCG AGCCGTGAGTTCGAAAAAATCATCGAATCCGATGCCTGGGGCATGACTCCGTTCGACCAGTTGGTCTGCCGTATCCAGTT CAAGCAGCTGCGCTACGAAGGCATGTTCACCCCGCCCACCCTGCAGGGGTCGCTGGCCTTCACCGGCAACCACGGCGGCA TCAACTGGGGCGGCGTTTCGGTGGACCTGCAGCGCGGCATCATGGTGATGAACAGCAATCGCCTGCCCTACACCTTGCAG GTGTATACCCGCCAGAAGATGGACGAGCTGGGCGTGGTGTCGGTGTTCGACGGCAAGAGCAAGACCCCCGGCTACATGGC GCAGAAGGGCCTGGCCTACGGCGCCCGCAAGGAGCCGTGGATGTCGCCGCTCAACACCCCGTGCGTGGCACCGCCGTGGG GCTACATCGCCGGTGTGGACCTGCGCACGCAGCAGGTGATCTGGCGTCGTCCGCTGGGCACCGGTTACGACCAGGGTCCG ATGGCCATCCCGTCCAAGACCAAGTTCGAGATCGGCACGCCCAACAACAGCGGCTCGCTGGCCACCGCTGGCGGGGTGAC CTTCATCGGCGCGACCCTGGACGACTTCATGCGCGGCTTCGACACCCTTACCGGCAAGCAGGTCTGGGAAACCCGCGTCC CCGCCGGGCCGCAGGCAGCGCCGATGAGCTACACCATCAACGGCAAGCAATACATCGTGGCCGCCGTCGGTGGACACGAC CGCATGGAAACCAAGTCGGGCGACAGCGTCATTGCCTGGGCCCTGCCCGACGATGCGCAGGCCGCGCCTGCCAAGTAA
Upstream 100 bases:
>100_bases TGTGTATCTAGATCCGGCCCGCGTGATGGCGCCTGCGATCGCTCTCCCTCCACGACTCGCCACCGCTCGCTGGTGCCTGA GTCCTTCCTGACATCTCAAA
Downstream 100 bases:
>100_bases CGGCAGTGCTGGAAGCCTCATGCGGCCAGGCGGTGCGCTGATGCGCACAAGCCCATGCAGTCTGCACTGCATCGGCCGCT GCGCCTCACCCGCCCGGCAA
Product: glucose dehydrogenase
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 825; Mature: 824
Protein sequence:
>825_residues MTDQSSKRGLGTWLLVAYAVVIAVLGAVLAYQGGRLVAVGGSWYYLIAGIALFLAGVLLALGKRAGLWLFGATLAGTIAW ALWEVGLDGWGLVPRLAMMSVLGLVLLPFWGVARRRMQPLSGLSYALVTGVLPILGAALILWPLLMPRNVELADASKLPA DSATAFSRGTVPSPDGNVAANHDASNWTSYAGSNLSNHYTPGAQITPDNVKNLKVAWEFHTGDLKPKDSKLGYAFQNTPL KVGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAECPTRIFWPMVDGRLGALDAQ TGKLCTSFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGVVIQPTGQVRDGQEGDAPSGVVRGFDALTGQLRWAWDLGNP AITAEPPAGQTYTRSTPNVWSLMAADDELGLVYLPTGNASGDFFGKGRTPQDEEYTASLVAVDAATGKERWHFRTVNHDL WDYDIGPQPNLVDWPVAGGGTRTAVIQATKSGQVFVLDRATGEPIMPVKQIPVPQGTDHGDWTAATQPISPGMPNTVGAP SREFEKIIESDAWGMTPFDQLVCRIQFKQLRYEGMFTPPTLQGSLAFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTLQ VYTRQKMDELGVVSVFDGKSKTPGYMAQKGLAYGARKEPWMSPLNTPCVAPPWGYIAGVDLRTQQVIWRRPLGTGYDQGP MAIPSKTKFEIGTPNNSGSLATAGGVTFIGATLDDFMRGFDTLTGKQVWETRVPAGPQAAPMSYTINGKQYIVAAVGGHD RMETKSGDSVIAWALPDDAQAAPAK
Sequences:
>Translated_825_residues MTDQSSKRGLGTWLLVAYAVVIAVLGAVLAYQGGRLVAVGGSWYYLIAGIALFLAGVLLALGKRAGLWLFGATLAGTIAW ALWEVGLDGWGLVPRLAMMSVLGLVLLPFWGVARRRMQPLSGLSYALVTGVLPILGAALILWPLLMPRNVELADASKLPA DSATAFSRGTVPSPDGNVAANHDASNWTSYAGSNLSNHYTPGAQITPDNVKNLKVAWEFHTGDLKPKDSKLGYAFQNTPL KVGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAECPTRIFWPMVDGRLGALDAQ TGKLCTSFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGVVIQPTGQVRDGQEGDAPSGVVRGFDALTGQLRWAWDLGNP AITAEPPAGQTYTRSTPNVWSLMAADDELGLVYLPTGNASGDFFGKGRTPQDEEYTASLVAVDAATGKERWHFRTVNHDL WDYDIGPQPNLVDWPVAGGGTRTAVIQATKSGQVFVLDRATGEPIMPVKQIPVPQGTDHGDWTAATQPISPGMPNTVGAP SREFEKIIESDAWGMTPFDQLVCRIQFKQLRYEGMFTPPTLQGSLAFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTLQ VYTRQKMDELGVVSVFDGKSKTPGYMAQKGLAYGARKEPWMSPLNTPCVAPPWGYIAGVDLRTQQVIWRRPLGTGYDQGP MAIPSKTKFEIGTPNNSGSLATAGGVTFIGATLDDFMRGFDTLTGKQVWETRVPAGPQAAPMSYTINGKQYIVAAVGGHD RMETKSGDSVIAWALPDDAQAAPAK >Mature_824_residues TDQSSKRGLGTWLLVAYAVVIAVLGAVLAYQGGRLVAVGGSWYYLIAGIALFLAGVLLALGKRAGLWLFGATLAGTIAWA LWEVGLDGWGLVPRLAMMSVLGLVLLPFWGVARRRMQPLSGLSYALVTGVLPILGAALILWPLLMPRNVELADASKLPAD SATAFSRGTVPSPDGNVAANHDASNWTSYAGSNLSNHYTPGAQITPDNVKNLKVAWEFHTGDLKPKDSKLGYAFQNTPLK VGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAECPTRIFWPMVDGRLGALDAQT GKLCTSFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGVVIQPTGQVRDGQEGDAPSGVVRGFDALTGQLRWAWDLGNPA ITAEPPAGQTYTRSTPNVWSLMAADDELGLVYLPTGNASGDFFGKGRTPQDEEYTASLVAVDAATGKERWHFRTVNHDLW DYDIGPQPNLVDWPVAGGGTRTAVIQATKSGQVFVLDRATGEPIMPVKQIPVPQGTDHGDWTAATQPISPGMPNTVGAPS REFEKIIESDAWGMTPFDQLVCRIQFKQLRYEGMFTPPTLQGSLAFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTLQV YTRQKMDELGVVSVFDGKSKTPGYMAQKGLAYGARKEPWMSPLNTPCVAPPWGYIAGVDLRTQQVIWRRPLGTGYDQGPM AIPSKTKFEIGTPNNSGSLATAGGVTFIGATLDDFMRGFDTLTGKQVWETRVPAGPQAAPMSYTINGKQYIVAAVGGHDR METKSGDSVIAWALPDDAQAAPAK
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=815, Percent_Identity=41.2269938650307, Blast_Score=580, Evalue=1e-166,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 88251; Mature: 88120
Theoretical pI: Translated: 7.83; Mature: 7.83
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQSSKRGLGTWLLVAYAVVIAVLGAVLAYQGGRLVAVGGSWYYLIAGIALFLAGVLLA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH LGKRAGLWLFGATLAGTIAWALWEVGLDGWGLVPRLAMMSVLGLVLLPFWGVARRRMQPL HCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SGLSYALVTGVLPILGAALILWPLLMPRNVELADASKLPADSATAFSRGTVPSPDGNVAA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEE NHDASNWTSYAGSNLSNHYTPGAQITPDNVKNLKVAWEFHTGDLKPKDSKLGYAFQNTPL CCCCCCCHHHCCCCCCCCCCCCCEECCCCCCEEEEEEEEECCCCCCCCCCCCEEECCCCE KVGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAE EECCEEEEECCCCEEEEEEECCCCHHEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCC CPTRIFWPMVDGRLGALDAQTGKLCTSFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGV CCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE VIQPTGQVRDGQEGDAPSGVVRGFDALTGQLRWAWDLGNPAITAEPPAGQTYTRSTPNVW EECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCEE SLMAADDELGLVYLPTGNASGDFFGKGRTPQDEEYTASLVAVDAATGKERWHFRTVNHDL EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCC WDYDIGPQPNLVDWPVAGGGTRTAVIQATKSGQVFVLDRATGEPIMPVKQIPVPQGTDHG CCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCCCC DWTAATQPISPGMPNTVGAPSREFEKIIESDAWGMTPFDQLVCRIQFKQLRYEGMFTPPT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC LQGSLAFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTLQVYTRQKMDELGVVSVFDGKS CCCEEEEECCCCCEECCCEEEEECCCEEEEECCCCCEEEEEEEHHHHHHCCEEEEECCCC KTPGYMAQKGLAYGARKEPWMSPLNTPCVAPPWGYIAGVDLRTQQVIWRRPLGTGYDQGP CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCC MAIPSKTKFEIGTPNNSGSLATAGGVTFIGATLDDFMRGFDTLTGKQVWETRVPAGPQAA CCCCCCCEEEECCCCCCCCEEECCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCCC PMSYTINGKQYIVAAVGGHDRMETKSGDSVIAWALPDDAQAAPAK CEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure TDQSSKRGLGTWLLVAYAVVIAVLGAVLAYQGGRLVAVGGSWYYLIAGIALFLAGVLLA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH LGKRAGLWLFGATLAGTIAWALWEVGLDGWGLVPRLAMMSVLGLVLLPFWGVARRRMQPL HCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SGLSYALVTGVLPILGAALILWPLLMPRNVELADASKLPADSATAFSRGTVPSPDGNVAA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEE NHDASNWTSYAGSNLSNHYTPGAQITPDNVKNLKVAWEFHTGDLKPKDSKLGYAFQNTPL CCCCCCCHHHCCCCCCCCCCCCCEECCCCCCEEEEEEEEECCCCCCCCCCCCEEECCCCE KVGDLLYICTPTQKVIAVEAANGKERWRFDPQTNPKAMAGVAATTCRGVSYYQAPEGTAE EECCEEEEECCCCEEEEEEECCCCHHEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCC CPTRIFWPMVDGRLGALDAQTGKLCTSFGNNGYVDLNAGTGNTKPGFVGPTSPPVVMRGV CCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE VIQPTGQVRDGQEGDAPSGVVRGFDALTGQLRWAWDLGNPAITAEPPAGQTYTRSTPNVW EECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCEE SLMAADDELGLVYLPTGNASGDFFGKGRTPQDEEYTASLVAVDAATGKERWHFRTVNHDL EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCC WDYDIGPQPNLVDWPVAGGGTRTAVIQATKSGQVFVLDRATGEPIMPVKQIPVPQGTDHG CCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCCCC DWTAATQPISPGMPNTVGAPSREFEKIIESDAWGMTPFDQLVCRIQFKQLRYEGMFTPPT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC LQGSLAFTGNHGGINWGGVSVDLQRGIMVMNSNRLPYTLQVYTRQKMDELGVVSVFDGKS CCCEEEEECCCCCEECCCEEEEECCCEEEEECCCCCEEEEEEEHHHHHHCCEEEEECCCC KTPGYMAQKGLAYGARKEPWMSPLNTPCVAPPWGYIAGVDLRTQQVIWRRPLGTGYDQGP CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCC MAIPSKTKFEIGTPNNSGSLATAGGVTFIGATLDDFMRGFDTLTGKQVWETRVPAGPQAA CCCCCCCEEEECCCCCCCCEEECCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCCC PMSYTINGKQYIVAAVGGHDRMETKSGDSVIAWALPDDAQAAPAK CEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]