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The map label for this gene is yddE [C]

Identifier: 21243639

GI number: 21243639

Start: 3420542

End: 3421420

Strand: Direct

Name: yddE [C]

Synonym: XAC2912

Alternate gene names: 21243639

Gene position: 3420542-3421420 (Clockwise)

Preceding gene: 21243633

Following gene: 21243640

Centisome position: 66.09

GC content: 68.83

Gene sequence:

>879_bases
ATGAGCAAGCACCGCTATCTGCAACTGGATGTTTTCGCCGGCCGGGCCGGCAGCGGCAACCCACTGGGCGTGGTCTTCAA
TGCAGAGACGTTGTCGTCTGCGCAAATGCAGCAGATTGCCGCGTGGCTGAATCTGTCCGAGACGGTCTTCTTCCTGCCGG
TCAGCGTGCCCGATGCCGATTACCACATCCGCATCTTCACCCCGCGTACCGAGCTACCGTTTGCCGGCCACCCCAGCGTC
GGCGCAGCGTGGGCGGCGGTGACCCACGGCGTGACCGCCTATAAGCCCGACGGCCGGCTGCGCCAGCAATGCGCAGCCGG
CGTGCTGCCGGTGGACGTGTTCGACCGATACGGCGCCTTGCTGGTGCGGCTGCGCGCGCCGCGCGCACGCGCCATCGACA
CGGGCGACACGTACGCCGACGCGCTGCGCGCCGCCTGCGCTGGCCTGGGCGCGAGCGCGCAGCCGGCCGCGCTCTGGAAC
AACGGCCCGAACTGGTGGCTGCTGGAATTGGCCGACGCGCAGGCGGTACGGCAGGCAGCCCCGGACCTTGCCGCCATTGC
GCGCCTGACTCAGGCCAGTGCCGCTTGCGGACTGGCCATCTATGCGCCCATGCATGACCACGACGCAGACCTGGTCGTCC
GTGCCTTCTGCCCAGGCGATGGCATTCCGGAAGACCCGGTGACCGGCAGCGCCAATGCCTGTATTGCCGCACGCCTGCAT
GGCGAAGACCGCCTGCCCGGGGCGCAGTCGCGCTACGTCGCCAGTCAGGGCCGCGAGGTTGGCCGCGATGGCCGCGTCCA
TGTGGACGTGGACGCGGAAGGCGAAGTCTGGATTGGCGGAGCGACGCTGCAGGTGATCGACGGCCGCATCGATTGGTAA

Upstream 100 bases:

>100_bases
GACCCCGCGTCCGATCACTGCGTGCCGTCGCACCTCCACTGCCGTGTCGGTTTGCCCTGCAACCATCGCCGCGCCCTCCT
TCGATCGAGATTTCCCCACG

Downstream 100 bases:

>100_bases
GCTGCCGCGCCCTCACTGCGGATCGACGCCCATGACCACTCGCCGTTTCCTGCAATTGGATGTGTTCTCCGCCCGCCCCG
GCAGCGGCAATCCGCTGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSKHRYLQLDVFAGRAGSGNPLGVVFNAETLSSAQMQQIAAWLNLSETVFFLPVSVPDADYHIRIFTPRTELPFAGHPSV
GAAWAAVTHGVTAYKPDGRLRQQCAAGVLPVDVFDRYGALLVRLRAPRARAIDTGDTYADALRAACAGLGASAQPAALWN
NGPNWWLLELADAQAVRQAAPDLAAIARLTQASAACGLAIYAPMHDHDADLVVRAFCPGDGIPEDPVTGSANACIAARLH
GEDRLPGAQSRYVASQGREVGRDGRVHVDVDAEGEVWIGGATLQVIDGRIDW

Sequences:

>Translated_292_residues
MSKHRYLQLDVFAGRAGSGNPLGVVFNAETLSSAQMQQIAAWLNLSETVFFLPVSVPDADYHIRIFTPRTELPFAGHPSV
GAAWAAVTHGVTAYKPDGRLRQQCAAGVLPVDVFDRYGALLVRLRAPRARAIDTGDTYADALRAACAGLGASAQPAALWN
NGPNWWLLELADAQAVRQAAPDLAAIARLTQASAACGLAIYAPMHDHDADLVVRAFCPGDGIPEDPVTGSANACIAARLH
GEDRLPGAQSRYVASQGREVGRDGRVHVDVDAEGEVWIGGATLQVIDGRIDW
>Mature_291_residues
SKHRYLQLDVFAGRAGSGNPLGVVFNAETLSSAQMQQIAAWLNLSETVFFLPVSVPDADYHIRIFTPRTELPFAGHPSVG
AAWAAVTHGVTAYKPDGRLRQQCAAGVLPVDVFDRYGALLVRLRAPRARAIDTGDTYADALRAACAGLGASAQPAALWNN
GPNWWLLELADAQAVRQAAPDLAAIARLTQASAACGLAIYAPMHDHDADLVVRAFCPGDGIPEDPVTGSANACIAARLHG
EDRLPGAQSRYVASQGREVGRDGRVHVDVDAEGEVWIGGATLQVIDGRIDW

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=280, Percent_Identity=31.0714285714286, Blast_Score=90, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321818, Length=299, Percent_Identity=31.7725752508361, Blast_Score=140, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31038; Mature: 30907

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKHRYLQLDVFAGRAGSGNPLGVVFNAETLSSAQMQQIAAWLNLSETVFFLPVSVPDAD
CCCCEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
YHIRIFTPRTELPFAGHPSVGAAWAAVTHGVTAYKPDGRLRQQCAAGVLPVDVFDRYGAL
EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCEEECCCCHHHHHHHCCCCCHHHHHHHCEE
LVRLRAPRARAIDTGDTYADALRAACAGLGASAQPAALWNNGPNWWLLELADAQAVRQAA
EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHC
PDLAAIARLTQASAACGLAIYAPMHDHDADLVVRAFCPGDGIPEDPVTGSANACIAARLH
CHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
GEDRLPGAQSRYVASQGREVGRDGRVHVDVDAEGEVWIGGATLQVIDGRIDW
CCCCCCCCHHHHHHHCCHHCCCCCCEEEEECCCCCEEECCEEEEEECCCCCC
>Mature Secondary Structure 
SKHRYLQLDVFAGRAGSGNPLGVVFNAETLSSAQMQQIAAWLNLSETVFFLPVSVPDAD
CCCEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
YHIRIFTPRTELPFAGHPSVGAAWAAVTHGVTAYKPDGRLRQQCAAGVLPVDVFDRYGAL
EEEEEEECCCCCCCCCCCCCCHHHHHHHCCCEEECCCCHHHHHHHCCCCCHHHHHHHCEE
LVRLRAPRARAIDTGDTYADALRAACAGLGASAQPAALWNNGPNWWLLELADAQAVRQAA
EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHC
PDLAAIARLTQASAACGLAIYAPMHDHDADLVVRAFCPGDGIPEDPVTGSANACIAARLH
CHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
GEDRLPGAQSRYVASQGREVGRDGRVHVDVDAEGEVWIGGATLQVIDGRIDW
CCCCCCCCHHHHHHHCCHHCCCCCCEEEEECCCCCEEECCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]