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The map label for this gene is yddE [C]

Identifier: 21243640

GI number: 21243640

Start: 3421452

End: 3422333

Strand: Direct

Name: yddE [C]

Synonym: XAC2913

Alternate gene names: 21243640

Gene position: 3421452-3422333 (Clockwise)

Preceding gene: 21243639

Following gene: 21243646

Centisome position: 66.11

GC content: 68.71

Gene sequence:

>882_bases
ATGACCACTCGCCGTTTCCTGCAATTGGATGTGTTCTCCGCCCGCCCCGGCAGCGGCAATCCGCTGGCGGTGGTGCTGGA
TGCCCAAGGTCTGGACGATGCGGCGATGCAGGCCATCGCACGCTGGACCAAACTGCCGGAGACCACCTTCGTCGTCCCCG
TCGAAAACGTGCACAGCAGCTACCGGCTGCGTATGTTTTCGCCGCAAAAAGAGGTGCCGTTTGCCGGCCACCCCAGCGTG
GGCACTGCACATGCCGTGCTCGAGGCCGGCCTGGCCGCACCACAGGACGGCGTCCTGGTGCAGGACGGCATCGCTGGTCA
GTTGCCGCTGCGCGTTGAGCAGCGCGACGGCCACCGCAGCATCGCGATCCGCACGCCACGCGCACGCGTGGCCGAGCAGG
TGGGCGCCGACGATCCGCGCCTGCGCGATGCCTTGCGGGGCTGGCCGCTGGGGACGCTACCGCCTGCGCTGATGGACGGC
GGCCGCACGTGGTGGGTGGTGGAACTGGACAGCGAAGCCGCGCTGCGCGGCCTGCAGCCGGACTGGGACGCGATCGCCGG
GTTGGCAGAATCTACCGGCAGCATGGGCGTGTTTGCGTATGCACGCGCCGGCGCACCGGGCGCCTACGATCTGGCAGTAC
GTGCCTTCGTCGGCAATGGCCGGCGCTTCGAAGATGCGGCGTCCGGCGCGGCCAATGCGGTCCTCGCCGCATGGCTGGAC
AGCCGTGACGCATTGCCCGGCACCGACCGTCGCTATGTGGTCAGCCAGGGCCGCGAAATCGGCTTCGATGCCTTGCTGGA
ACTGCACATCGATGCCGACGGCGACGTGTGGTCGGGTGGCCAGGTGCAGACGGTGATTCGCGGCACGCTGGACTGGGCTT
AG

Upstream 100 bases:

>100_bases
GACGCGGAAGGCGAAGTCTGGATTGGCGGAGCGACGCTGCAGGTGATCGACGGCCGCATCGATTGGTAAGCTGCCGCGCC
CTCACTGCGGATCGACGCCC

Downstream 100 bases:

>100_bases
TCGGCGCGCCACAGGGCGCTTCCCGGAGGGTTGGCCGTCAGCGGCACGGAGCGCGCGCCGCGCGGCCTGCCTTGGCGCCA
GCCAAGCCGGCGCCACGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTTRRFLQLDVFSARPGSGNPLAVVLDAQGLDDAAMQAIARWTKLPETTFVVPVENVHSSYRLRMFSPQKEVPFAGHPSV
GTAHAVLEAGLAAPQDGVLVQDGIAGQLPLRVEQRDGHRSIAIRTPRARVAEQVGADDPRLRDALRGWPLGTLPPALMDG
GRTWWVVELDSEAALRGLQPDWDAIAGLAESTGSMGVFAYARAGAPGAYDLAVRAFVGNGRRFEDAASGAANAVLAAWLD
SRDALPGTDRRYVVSQGREIGFDALLELHIDADGDVWSGGQVQTVIRGTLDWA

Sequences:

>Translated_293_residues
MTTRRFLQLDVFSARPGSGNPLAVVLDAQGLDDAAMQAIARWTKLPETTFVVPVENVHSSYRLRMFSPQKEVPFAGHPSV
GTAHAVLEAGLAAPQDGVLVQDGIAGQLPLRVEQRDGHRSIAIRTPRARVAEQVGADDPRLRDALRGWPLGTLPPALMDG
GRTWWVVELDSEAALRGLQPDWDAIAGLAESTGSMGVFAYARAGAPGAYDLAVRAFVGNGRRFEDAASGAANAVLAAWLD
SRDALPGTDRRYVVSQGREIGFDALLELHIDADGDVWSGGQVQTVIRGTLDWA
>Mature_292_residues
TTRRFLQLDVFSARPGSGNPLAVVLDAQGLDDAAMQAIARWTKLPETTFVVPVENVHSSYRLRMFSPQKEVPFAGHPSVG
TAHAVLEAGLAAPQDGVLVQDGIAGQLPLRVEQRDGHRSIAIRTPRARVAEQVGADDPRLRDALRGWPLGTLPPALMDGG
RTWWVVELDSEAALRGLQPDWDAIAGLAESTGSMGVFAYARAGAPGAYDLAVRAFVGNGRRFEDAASGAANAVLAAWLDS
RDALPGTDRRYVVSQGREIGFDALLELHIDADGDVWSGGQVQTVIRGTLDWA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=280, Percent_Identity=27.8571428571429, Blast_Score=92, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6321818, Length=297, Percent_Identity=27.6094276094276, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31352; Mature: 31220

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRRFLQLDVFSARPGSGNPLAVVLDAQGLDDAAMQAIARWTKLPETTFVVPVENVHSS
CCCCEEEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEHHHCCCC
YRLRMFSPQKEVPFAGHPSVGTAHAVLEAGLAAPQDGVLVQDGIAGQLPLRVEQRDGHRS
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCCCEE
IAIRTPRARVAEQVGADDPRLRDALRGWPLGTLPPALMDGGRTWWVVELDSEAALRGLQP
EEEECCHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEECCHHHHCCCCC
DWDAIAGLAESTGSMGVFAYARAGAPGAYDLAVRAFVGNGRRFEDAASGAANAVLAAWLD
CHHHHHHHHHCCCCCEEEEEEECCCCCHHHEEEEEECCCCCCCHHHHCCHHHHHHEEECC
SRDALPGTDRRYVVSQGREIGFDALLELHIDADGDVWSGGQVQTVIRGTLDWA
CCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCEECCCEEEEEEEECCCCC
>Mature Secondary Structure 
TTRRFLQLDVFSARPGSGNPLAVVLDAQGLDDAAMQAIARWTKLPETTFVVPVENVHSS
CCCEEEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEHHHCCCC
YRLRMFSPQKEVPFAGHPSVGTAHAVLEAGLAAPQDGVLVQDGIAGQLPLRVEQRDGHRS
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCCCEE
IAIRTPRARVAEQVGADDPRLRDALRGWPLGTLPPALMDGGRTWWVVELDSEAALRGLQP
EEEECCHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEECCHHHHCCCCC
DWDAIAGLAESTGSMGVFAYARAGAPGAYDLAVRAFVGNGRRFEDAASGAANAVLAAWLD
CHHHHHHHHHCCCCCEEEEEEECCCCCHHHEEEEEECCCCCCCHHHHCCHHHHHHEEECC
SRDALPGTDRRYVVSQGREIGFDALLELHIDADGDVWSGGQVQTVIRGTLDWA
CCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCEECCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]