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The map label for this gene is yagR [H]

Identifier: 21243620

GI number: 21243620

Start: 3391905

End: 3394112

Strand: Reverse

Name: yagR [H]

Synonym: XAC2893

Alternate gene names: 21243620

Gene position: 3394112-3391905 (Counterclockwise)

Preceding gene: 21243621

Following gene: 21243619

Centisome position: 65.58

GC content: 65.31

Gene sequence:

>2208_bases
ATGAAATTCGACACTCCCGCCGGCACCAATCCCATCGATCAGCTTACGGTCGTCGGCAAGCCCGTCGACCGTATCGACGG
GCCACTCAAGACCACCGGGCAGGCGCCGTATGCCTACGAACATCATGACTTGCCGGGCCAAGCCGCTTACGGGCATGTGG
TGGGCGCAGGCATCGCCAAGGGCACCATCCGCAGTATCGATCTGAGTGCGGCACGCAAGGCGCCAGGCGTGCTGGGCATC
GTGACTGCGCAGAACGCCGGCAAGCTGCAAAAGGGCAAGTTCAACACCGCCAAGCTCTTGGGCGGACCCGAGATCGCGCA
TTACCACCAGGCCATTGCAGTGGTGGTGGCGGAGACCTTCGAGCAGGCGCGTGCGGCCGGCCAGTTGATCAAGGTCGATT
ACGGCCGTCACGTGGGCGCCTACGACCTGGAAAAGGCCCGCGCCGGCGCCACGGTGACCAAGAAGGGCGACGCGCCCAAC
AGCAACGTCGGCAACTTCGACGCTGCCTTCGCGACGGCGCCAGTGCAACTGGATGCCGAATACAGCACACCCGATCATTC
GCACGCGATGATGGAGCCGCACGCTTCCATCGCGATGTGGGATGGCGACAAGCTCAGCGTGTGGACCTCCAATCAGATGA
TCAACTGGGGAGCCGGCGATCTGGCCAGGACGCTGGGCATCCCGCGCGAGAACGTGCGGATCATGTCGCCGTACGTCGGC
GGCGGTTTCGGCGGCAAGCTGTTCCTGCGTGCCGATGCAGTGCTGGCATCGCTGGCCGCGCGTCAGGTCGGACGGCCGGT
CAAGGTGATGTTGCCGCGGCCGCTGATCGCCAATAACACCACCCACCGCCCGGCCACGCTGCAACGCATCCGGCTTGCGG
CCGGGCGCGACGGCAAGCTCACGGCGATCGCGCATGAAAGCTGGTCGGGCGACTTGCCCGACGGCAGCCCGGAAATCGCC
GCCGCGCAGACGCAATTGCTCTACGCCGGTGCTAACCGCCTGATCACGACCCGTCTGGCCGTGCTCGATCTGCCCGAAGG
CAACGCCATGCGCGCGCCGGGCGAGGCACCAGGGTTGATGGCGTTGGAAATCGCCATGGACGAGATGGCCGAAAAGCTCG
ACATGGACCCGGTCAAGTTCCGCATCGTCAACGACACCCAGGTGGACCCGGAAAATCCGCAGCGACCGTTCTCGCAGCGT
CAGCTGGTCACGTGCCTGGAAGATGGCGCAAGGCGATTCGGGTGGTCCAAGCGCAAGGCCAAGCCGGCCAGTACGCGCGA
TGGTCGTTGGCTGGTCGGCATGGGTGTTGCGGCGGCATTTCGCAACGCGCCGGTCATGACCTCCGGCGCACGCATGCGGC
TGGAGCAGGGCGGACGCGTGGTGGTGGAAACCGACATGACCGATATCGGGACCGGCTCCTACACCATCATTGCGCAGACC
GCTGCGGAAATGCTGGGCGTCCCACTCAACTGGGTCGATGTGCTCCTGGGCGATTCGAGCTTTCCGGCCTCTGCAGGCTC
CGGCGGGCAGTGGGGCGCGAACAGTTCTACCGCAGGCGTCTATGCAGCCGCAGTCAAATTGCGCGAAGCGGTGGCCAAGC
AACTGGGCCTGGATCCGGCCAGTGCCGAGTTTGCCGATGGCTATGTGCGTGCCGGCGGCAAGCGCGTTGCGCTCGGCGAT
GCCGCGGCCAATGGCGCGCTGGTGGTGGAAGACAAGATCGAATTCGGCGACCTCAGCAAAACGCACCAGCTCTCCACGTT
CGGCGCGCATTTCGTCGAAGTGGGCGTGGATATCGCAACCGCCGAAGTGCGCATCCGGCGCATGCTTGCCGTGTGCGCCG
CGGGGCGCATCCTCAATCCCAAATCCGCACGCAGCCAGGTCATCGGCGGCATGACCATGGGCGCCGGCGCGGCACTGATG
GAAGAGCTGGCAGTGGACAAACGCCTGGGCTTCTTCGTCAACCACGACCTGGCCGGCTATGAAGTGCCGGTGCATGCGGA
TATCCCGCATCAGGAGGTGGTGTTCCTGGAAGAAAACGACCCGTTGTCGTCGCCGATGAAGGCCAAGGGCGTGGGCGAGC
TGGGTATCTGCGGCGTGGCAGCGGCGATCGCCAATGCGGTCTACAACGCAACCGGCGTGCGTGTGCGCGACTACCCGGTC
ACCCTCGACAAACTGCTGCCGCACCTGCCCGAGATGCTGCGCGCGTGA

Upstream 100 bases:

>100_bases
GTGCTGCTCGACGGCGCACGGCCCACCGAACACAACGCATTCAAGGTGCCGCTGGTTGAGCGCACCTTGACCGCGATCTT
GGCCGACACGAGGGCCTGAT

Downstream 100 bases:

>100_bases
GCGCGCTCGTTGCCCCCGTCACGCATGCGCCGCCGGCGTGGCCGGCATGGCCGGGCTACGCGTTGCTCGACGATTTGCTG
CCAACGCTGAGCGCATGGCA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 735

Protein sequence:

>735_residues
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQAAYGHVVGAGIAKGTIRSIDLSAARKAPGVLGI
VTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETFEQARAAGQLIKVDYGRHVGAYDLEKARAGATVTKKGDAPN
SNVGNFDAAFATAPVQLDAEYSTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGIPRENVRIMSPYVG
GGFGGKLFLRADAVLASLAARQVGRPVKVMLPRPLIANNTTHRPATLQRIRLAAGRDGKLTAIAHESWSGDLPDGSPEIA
AAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLMALEIAMDEMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQR
QLVTCLEDGARRFGWSKRKAKPASTRDGRWLVGMGVAAAFRNAPVMTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
AAEMLGVPLNWVDVLLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVAKQLGLDPASAEFADGYVRAGGKRVALGD
AAANGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDIATAEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALM
EELAVDKRLGFFVNHDLAGYEVPVHADIPHQEVVFLEENDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
TLDKLLPHLPEMLRA

Sequences:

>Translated_735_residues
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQAAYGHVVGAGIAKGTIRSIDLSAARKAPGVLGI
VTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETFEQARAAGQLIKVDYGRHVGAYDLEKARAGATVTKKGDAPN
SNVGNFDAAFATAPVQLDAEYSTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGIPRENVRIMSPYVG
GGFGGKLFLRADAVLASLAARQVGRPVKVMLPRPLIANNTTHRPATLQRIRLAAGRDGKLTAIAHESWSGDLPDGSPEIA
AAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLMALEIAMDEMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQR
QLVTCLEDGARRFGWSKRKAKPASTRDGRWLVGMGVAAAFRNAPVMTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
AAEMLGVPLNWVDVLLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVAKQLGLDPASAEFADGYVRAGGKRVALGD
AAANGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDIATAEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALM
EELAVDKRLGFFVNHDLAGYEVPVHADIPHQEVVFLEENDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
TLDKLLPHLPEMLRA
>Mature_735_residues
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQAAYGHVVGAGIAKGTIRSIDLSAARKAPGVLGI
VTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETFEQARAAGQLIKVDYGRHVGAYDLEKARAGATVTKKGDAPN
SNVGNFDAAFATAPVQLDAEYSTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGIPRENVRIMSPYVG
GGFGGKLFLRADAVLASLAARQVGRPVKVMLPRPLIANNTTHRPATLQRIRLAAGRDGKLTAIAHESWSGDLPDGSPEIA
AAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLMALEIAMDEMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQR
QLVTCLEDGARRFGWSKRKAKPASTRDGRWLVGMGVAAAFRNAPVMTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
AAEMLGVPLNWVDVLLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVAKQLGLDPASAEFADGYVRAGGKRVALGD
AAANGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDIATAEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALM
EELAVDKRLGFFVNHDLAGYEVPVHADIPHQEVVFLEENDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
TLDKLLPHLPEMLRA

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=751, Percent_Identity=24.7669773635153, Blast_Score=139, Evalue=9e-33,
Organism=Homo sapiens, GI91823271, Length=764, Percent_Identity=24.4764397905759, Blast_Score=134, Evalue=2e-31,
Organism=Escherichia coli, GI1786478, Length=733, Percent_Identity=69.1678035470669, Blast_Score=1020, Evalue=0.0,
Organism=Escherichia coli, GI1789230, Length=751, Percent_Identity=31.0252996005326, Blast_Score=256, Evalue=5e-69,
Organism=Escherichia coli, GI1789246, Length=809, Percent_Identity=26.823238566131, Blast_Score=200, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI17540638, Length=721, Percent_Identity=25.6588072122053, Blast_Score=169, Evalue=6e-42,
Organism=Caenorhabditis elegans, GI17539860, Length=721, Percent_Identity=21.3592233009709, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24647199, Length=735, Percent_Identity=23.9455782312925, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24647201, Length=729, Percent_Identity=23.3196159122085, Blast_Score=137, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24647195, Length=754, Percent_Identity=23.6074270557029, Blast_Score=127, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24647197, Length=772, Percent_Identity=23.1865284974093, Blast_Score=119, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24647193, Length=737, Percent_Identity=23.8805970149254, Blast_Score=119, Evalue=8e-27,
Organism=Drosophila melanogaster, GI17737937, Length=697, Percent_Identity=23.3859397417504, Blast_Score=114, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 77732; Mature: 77732

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQAAYGHVVGAGIAK
CCCCCCCCCCCHHHEEEECCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCC
GTIRSIDLSAARKAPGVLGIVTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETF
CCEEEEEHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
EQARAAGQLIKVDYGRHVGAYDLEKARAGATVTKKGDAPNSNVGNFDAAFATAPVQLDAE
HHHHHCCCEEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCHHHEECCEEEECC
YSTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGIPRENVRIMSPYVG
CCCCCCCCCEECCCCEEEEECCCEEEEEECCCEEECCCHHHHHHHCCCCCCCEEECCCCC
GGFGGKLFLRADAVLASLAARQVGRPVKVMLPRPLIANNTTHRPATLQRIRLAAGRDGKL
CCCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCHHHHHHHHHCCCCCCE
TAIAHESWSGDLPDGSPEIAAAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLM
EEEEECCCCCCCCCCCCCHHHHHHEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCEE
ALEIAMDEMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQRQLVTCLEDGARRFGWSKRKA
EEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCC
KPASTRDGRWLVGMGVAAAFRNAPVMTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
CCCCCCCCCEEEECCHHHHHCCCCCEECCCCEEECCCCEEEEEECCCCCCCCCEEEEEHH
AAEMLGVPLNWVDVLLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVAKQLGLDPA
HHHHHCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SAEFADGYVRAGGKRVALGDAAANGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDIAT
CCHHHCHHHHCCCCEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEH
AEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALMEELAVDKRLGFFVNHDLAGY
HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCE
EVPVHADIPHQEVVFLEENDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
EEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
TLDKLLPHLPEMLRA
CHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFDTPAGTNPIDQLTVVGKPVDRIDGPLKTTGQAPYAYEHHDLPGQAAYGHVVGAGIAK
CCCCCCCCCCCHHHEEEECCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCC
GTIRSIDLSAARKAPGVLGIVTAQNAGKLQKGKFNTAKLLGGPEIAHYHQAIAVVVAETF
CCEEEEEHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
EQARAAGQLIKVDYGRHVGAYDLEKARAGATVTKKGDAPNSNVGNFDAAFATAPVQLDAE
HHHHHCCCEEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCHHHEECCEEEECC
YSTPDHSHAMMEPHASIAMWDGDKLSVWTSNQMINWGAGDLARTLGIPRENVRIMSPYVG
CCCCCCCCCEECCCCEEEEECCCEEEEEECCCEEECCCHHHHHHHCCCCCCCEEECCCCC
GGFGGKLFLRADAVLASLAARQVGRPVKVMLPRPLIANNTTHRPATLQRIRLAAGRDGKL
CCCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCHHHHHHHHHCCCCCCE
TAIAHESWSGDLPDGSPEIAAAQTQLLYAGANRLITTRLAVLDLPEGNAMRAPGEAPGLM
EEEEECCCCCCCCCCCCCHHHHHHEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCEE
ALEIAMDEMAEKLDMDPVKFRIVNDTQVDPENPQRPFSQRQLVTCLEDGARRFGWSKRKA
EEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCC
KPASTRDGRWLVGMGVAAAFRNAPVMTSGARMRLEQGGRVVVETDMTDIGTGSYTIIAQT
CCCCCCCCCEEEECCHHHHHCCCCCEECCCCEEECCCCEEEEEECCCCCCCCCEEEEEHH
AAEMLGVPLNWVDVLLGDSSFPASAGSGGQWGANSSTAGVYAAAVKLREAVAKQLGLDPA
HHHHHCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SAEFADGYVRAGGKRVALGDAAANGALVVEDKIEFGDLSKTHQLSTFGAHFVEVGVDIAT
CCHHHCHHHHCCCCEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEH
AEVRIRRMLAVCAAGRILNPKSARSQVIGGMTMGAGAALMEELAVDKRLGFFVNHDLAGY
HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCE
EVPVHADIPHQEVVFLEENDPLSSPMKAKGVGELGICGVAAAIANAVYNATGVRVRDYPV
EEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
TLDKLLPHLPEMLRA
CHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]