| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is gltX
Identifier: 21243574
GI number: 21243574
Start: 3338819
End: 3340222
Strand: Reverse
Name: gltX
Synonym: XAC2847
Alternate gene names: 21243574
Gene position: 3340222-3338819 (Counterclockwise)
Preceding gene: 21243575
Following gene: 21243573
Centisome position: 64.54
GC content: 64.46
Gene sequence:
>1404_bases ATGACCTGCCGCACCCGTTTCGCTCCCAGCCCCACCGGTTACCTGCATATCGGCGGCGCCCGCACCGCCTTGTATTGCTG GCTGGAGGCACGCCACCGCGGCGGCCAGTTCGTGCTGCGCATCGAGGACACCGACCGCGAGCGCAGCACGCAGGAAGCGA TCGACGCCATCCTGGAAGCGATGGACTGGCTGGGGCTGGGTTACGACGAAGGCCCGATCTACCAGACCCAGCGCGTTGCC CGCTATCAAGAAGTCGCCGAGCAATTGCTCGCGCAGGGCAAGGCGTATTACGCCTACGAAACCCGCGAGGAACTCGACGC CATGCGCGAGGCCGCCATGGCCAAGCAGGAAAAGCCGCGTTACAACGGCGCTGCCCGCGAGCAGAACCTGCCGTATCGCG ACGACCCCAATCGCGTGATCCGCTTCAAGAATCCCGTCGGCGGTACGGTGGTGTTCGACGACCTGATCAAGGGACGCATC GAGATCGCCAACAGCGAGCTCGACGACATGGTGATCTTCCGCCCGGACGGGTTTCCCACCTACAACTTTGCGGTGGTGGT GGACGACTGGGACATGGGCATCACCGAGGTCATCCGCGGCGACGACCACATCAACAACACCCCGCGCCAGATCAATATCT ATGAAGCGCTGGATGCACCGGTGCCCAAGTTCGCGCACATGCCGATGATCCTCGACGAGCAGGGCGCCAAGCTGTCCAAG CGCACCGGCGCGGCCGACGTCATGCAGTACAAGGATGCCGGCTATCTGCCGCATGCGCTGATCAATTATCTGGCCCGCCT GGGCTGGTCGCATGGCGACCAGGAGCTGTTCACCCAGCAGGAGTTGCTGGACCTGTTCGACGTCAAGGACGTCAATTCCA AGGCCGCGCGCCTGGACATGGCCAAGCTCGGCTGGGTCAATCAGCATTATCTGAAGACCGACGACCCGGCCAGCATCGCC CCGCAGTTGGAATACCAGCTTGCCAAGCTCGGTGTGGACATCGCCGCCGGCCCGGCCGCCGCCGATGTGGTGGTGGCGTT GCGCGAGCGCGTGCAGACCTTGAAGGAAATGGCCGAAAAAGCCGTGGTCTGGTACCAGCCGCTGGAAACCTATGACGAAG CGGCGGTGATGAAACACCTCAAGCTGGGCGCCGAGGTGCCGCTGGGCAAGGCGCGCGAACTGCTGGCTGCCGTGGATGCG TGGAGCGTGGAGAGCGTCTCGGCTGCGCTGCACGACGCCGCTGCCGCGCTGGAACTGGGCATGGGCAAGGTCGCCCAGCC GCTGCGCGTGGCCATCACCGGCACCCAGGTCAGCCCGGACATTTCGCAAACGGTGTACCTGGCCGGACGCGAGGGTGCCT TGAAACGCATCGATGCGGCACTCATCAAGATTGGAGCGGCCTGA
Upstream 100 bases:
>100_bases TGGTGTACGGCGACCTGCTGCGCAACCGCTGAGCCACGGGCCGGGCAGGGCCACGCTGCGCAAGGTAAAATCGGGCGACT CCCGTTTTGCCGAGCGCTCC
Downstream 100 bases:
>100_bases CGCCGGAGCCTGTATGACCAAGCACACCCACGCACCAGACCTCGCCTGCACTGCACCGCATCACCACGTCGACGACGCCA ACGGCTTCGTGCGCGCGGTG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MTCRTRFAPSPTGYLHIGGARTALYCWLEARHRGGQFVLRIEDTDRERSTQEAIDAILEAMDWLGLGYDEGPIYQTQRVA RYQEVAEQLLAQGKAYYAYETREELDAMREAAMAKQEKPRYNGAAREQNLPYRDDPNRVIRFKNPVGGTVVFDDLIKGRI EIANSELDDMVIFRPDGFPTYNFAVVVDDWDMGITEVIRGDDHINNTPRQINIYEALDAPVPKFAHMPMILDEQGAKLSK RTGAADVMQYKDAGYLPHALINYLARLGWSHGDQELFTQQELLDLFDVKDVNSKAARLDMAKLGWVNQHYLKTDDPASIA PQLEYQLAKLGVDIAAGPAAADVVVALRERVQTLKEMAEKAVVWYQPLETYDEAAVMKHLKLGAEVPLGKARELLAAVDA WSVESVSAALHDAAAALELGMGKVAQPLRVAITGTQVSPDISQTVYLAGREGALKRIDAALIKIGAA
Sequences:
>Translated_467_residues MTCRTRFAPSPTGYLHIGGARTALYCWLEARHRGGQFVLRIEDTDRERSTQEAIDAILEAMDWLGLGYDEGPIYQTQRVA RYQEVAEQLLAQGKAYYAYETREELDAMREAAMAKQEKPRYNGAAREQNLPYRDDPNRVIRFKNPVGGTVVFDDLIKGRI EIANSELDDMVIFRPDGFPTYNFAVVVDDWDMGITEVIRGDDHINNTPRQINIYEALDAPVPKFAHMPMILDEQGAKLSK RTGAADVMQYKDAGYLPHALINYLARLGWSHGDQELFTQQELLDLFDVKDVNSKAARLDMAKLGWVNQHYLKTDDPASIA PQLEYQLAKLGVDIAAGPAAADVVVALRERVQTLKEMAEKAVVWYQPLETYDEAAVMKHLKLGAEVPLGKARELLAAVDA WSVESVSAALHDAAAALELGMGKVAQPLRVAITGTQVSPDISQTVYLAGREGALKRIDAALIKIGAA >Mature_466_residues TCRTRFAPSPTGYLHIGGARTALYCWLEARHRGGQFVLRIEDTDRERSTQEAIDAILEAMDWLGLGYDEGPIYQTQRVAR YQEVAEQLLAQGKAYYAYETREELDAMREAAMAKQEKPRYNGAAREQNLPYRDDPNRVIRFKNPVGGTVVFDDLIKGRIE IANSELDDMVIFRPDGFPTYNFAVVVDDWDMGITEVIRGDDHINNTPRQINIYEALDAPVPKFAHMPMILDEQGAKLSKR TGAADVMQYKDAGYLPHALINYLARLGWSHGDQELFTQQELLDLFDVKDVNSKAARLDMAKLGWVNQHYLKTDDPASIAP QLEYQLAKLGVDIAAGPAAADVVVALRERVQTLKEMAEKAVVWYQPLETYDEAAVMKHLKLGAEVPLGKARELLAAVDAW SVESVSAALHDAAAALELGMGKVAQPLRVAITGTQVSPDISQTVYLAGREGALKRIDAALIKIGAA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=326, Percent_Identity=36.8098159509202, Blast_Score=211, Evalue=2e-54, Organism=Escherichia coli, GI1788743, Length=461, Percent_Identity=54.4468546637744, Blast_Score=518, Evalue=1e-148, Organism=Escherichia coli, GI226510925, Length=242, Percent_Identity=38.8429752066116, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI1786895, Length=216, Percent_Identity=26.8518518518519, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71993394, Length=475, Percent_Identity=29.4736842105263, Blast_Score=189, Evalue=3e-48, Organism=Saccharomyces cerevisiae, GI6324540, Length=500, Percent_Identity=31.2, Blast_Score=236, Evalue=4e-63, Organism=Saccharomyces cerevisiae, GI6321192, Length=209, Percent_Identity=28.2296650717703, Blast_Score=77, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6324742, Length=109, Percent_Identity=33.9449541284404, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI24665321, Length=499, Percent_Identity=31.8637274549098, Blast_Score=232, Evalue=3e-61,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_XANAC (Q8PIP8)
Other databases:
- EMBL: AE008923 - RefSeq: NP_643156.1 - ProteinModelPortal: Q8PIP8 - SMR: Q8PIP8 - GeneID: 1156918 - GenomeReviews: AE008923_GR - KEGG: xac:XAC2847 - NMPDR: fig|190486.1.peg.2800 - HOGENOM: HBG628189 - OMA: MAHIPLI - ProtClustDB: PRK01406 - BioCyc: XAXO190486:XAC2847-MONOMER - BRENDA: 6.1.1.17 - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 51861; Mature: 51729
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 240-240
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTCRTRFAPSPTGYLHIGGARTALYCWLEARHRGGQFVLRIEDTDRERSTQEAIDAILEA CCCCCCCCCCCCCEEEECCCCEEHEEEHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHH MDWLGLGYDEGPIYQTQRVARYQEVAEQLLAQGKAYYAYETREELDAMREAAMAKQEKPR HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCC YNGAAREQNLPYRDDPNRVIRFKNPVGGTVVFDDLIKGRIEIANSELDDMVIFRPDGFPT CCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEHHHHHCHHEECCCCCCCEEEECCCCCCC YNFAVVVDDWDMGITEVIRGDDHINNTPRQINIYEALDAPVPKFAHMPMILDEQGAKLSK EEEEEEEECCCCCHHHHHCCCCCCCCCCCEEEEHHHHCCCCCCHHCCCEEECCCCCCHHH RTGAADVMQYKDAGYLPHALINYLARLGWSHGDQELFTQQELLDLFDVKDVNSKAARLDM HCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH AKLGWVNQHYLKTDDPASIAPQLEYQLAKLGVDIAAGPAAADVVVALRERVQTLKEMAEK HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHH AVVWYQPLETYDEAAVMKHLKLGAEVPLGKARELLAAVDAWSVESVSAALHDAAAALELG HEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC MGKVAQPLRVAITGTQVSPDISQTVYLAGREGALKRIDAALIKIGAA CCHHCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCC >Mature Secondary Structure TCRTRFAPSPTGYLHIGGARTALYCWLEARHRGGQFVLRIEDTDRERSTQEAIDAILEA CCCCCCCCCCCCEEEECCCCEEHEEEHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHH MDWLGLGYDEGPIYQTQRVARYQEVAEQLLAQGKAYYAYETREELDAMREAAMAKQEKPR HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCC YNGAAREQNLPYRDDPNRVIRFKNPVGGTVVFDDLIKGRIEIANSELDDMVIFRPDGFPT CCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEHHHHHCHHEECCCCCCCEEEECCCCCCC YNFAVVVDDWDMGITEVIRGDDHINNTPRQINIYEALDAPVPKFAHMPMILDEQGAKLSK EEEEEEEECCCCCHHHHHCCCCCCCCCCCEEEEHHHHCCCCCCHHCCCEEECCCCCCHHH RTGAADVMQYKDAGYLPHALINYLARLGWSHGDQELFTQQELLDLFDVKDVNSKAARLDM HCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH AKLGWVNQHYLKTDDPASIAPQLEYQLAKLGVDIAAGPAAADVVVALRERVQTLKEMAEK HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHH AVVWYQPLETYDEAAVMKHLKLGAEVPLGKARELLAAVDAWSVESVSAALHDAAAALELG HEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC MGKVAQPLRVAITGTQVSPDISQTVYLAGREGALKRIDAALIKIGAA CCHHCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12024217