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The map label for this gene is ttgF [H]

Identifier: 21243529

GI number: 21243529

Start: 3285133

End: 3286602

Strand: Reverse

Name: ttgF [H]

Synonym: XAC2802

Alternate gene names: 21243529

Gene position: 3286602-3285133 (Counterclockwise)

Preceding gene: 21243532

Following gene: 21243528

Centisome position: 63.5

GC content: 66.73

Gene sequence:

>1470_bases
ATGATTCCACAAATTATTCCGCATCGTTGGTCTTGCCTGTGCCTGGTCGCCGCCAGTGCGGCGCTGTCGGCTGGCTGCTC
GCTGACGCCGGCCTACCAGCGCCCGGTGGTCAGCGTGCCGGCCACCTTCGGCAGCCCGCAGGCGGCATCCGCACCGGCAT
CCGGTCAGCCCGACGCCAATGCGACCGCCGCCGTCGCTCTGAACGCGCAAGAGCGCGCGTTTCTGCAGGCCTTCGCGCCA
GACCGCGACCTGCGGCCCCTGATCGAGCGTGCCTTGGCGCACAACGGCGATTTCCGCCGTGCGGCGTTGCAGGTAGAACA
GGCGCGTGCGCAGTACGGCATCGCGCAGGCGTCGCGCCTGCCGACGCTCGCCGTCGGCGCACAGCAGCTGCGGCAACATT
TCGACAACCCGACGCTGGATGCGCGGTACCAGCAGGATCTGGTGATTGCCAATGCGGGGATCGGCAATTTAGAAGTGGAC
TTTTTCGGCAAGCTGCAGGCGATGTCCGAGGCCGCACGCCAGCGCTACCTGGCCAGTACCTATGGCCGCGACGCGGCGCG
TGGCGCTCTGATTGCAGAGGTACTGCGCGCCTACACCGCCGAGCGCGCCACGGCGCAGGCGCTGCAACAGCTGCAATCGC
TGGATGCCGACAGCGCTGCGTTGCTTGCCGTTGCCGAGCGGCAATATCAGGTAGGGCTGATTGCGCGCGACGAGCGCGAT
GCGCAGCGGCGACAGGCCGACCAGGCCCATGTGACGGCCCTGCAGGGCAACGACAACCACGCTGCGGCGGTGCGTGCGCT
GCAGTTGCTGGCCGGCTACGACAGCACTCCGGTACCCGGCGATCTGCAGGGTCTGATCGCCGCTGATACGCCTGCCAGTG
CGTGGCACGCCCTGGATTCGTCGCTGTTGCTGCAACGCCCGGACATCCAGCAGGCCGAGCTGGAGTTGCGCGCGGCCAAT
GCCGACATCGGTGCGGCGCGCGCGGCGTTTTTTCCGTCGATCACCTTGAGCAGCAGCGTGGGTACTGCCAGCGACGGATT
GAACGGCTTGTTTTCTGCAGGCCATGGCGTGTGGAGCTTCATGCCGCAGCTGAACCTGCCGTTGTTCGATGGCGGCCGCA
ATCGCGCCAATCTGGATCTGGCGCAGGTGCGCGAACGCGCCGATGTCGTTGCCTACGAACAGGCAATCGAAGCTGCATTC
CGCGAGGTCGCCAACGCGCTCGACGCCCACGCCACCTTGTCGCAGGCCGAACCGCGCTCGCGCGAGCAGGTCGAACGCGA
GCAACTGCGTCTTGCGCGAATGCATGAACGCGTGGATGCCGGTCTGGAAGACCGCAGCGCGCTGCTGGCCGAGCGGACCC
GCATCGCTCAGACCGAACTCGATTACCTGGATACCGCACGCCAACGCGTGCTGAGCCGTATTGCGCTGTTTCAGGCGTTC
TATGGCGTGCGCCTGCCCACCGCTTCCTGA

Upstream 100 bases:

>100_bases
GTTGCCCTGTCGTCTCGATCAAATCTGGATAATTCCCGAAAACAACCTGGACGCTGCGGGTCGAGGATGTCGGTCGAGAT
TGGCTCTGTGCTCCGACATC

Downstream 100 bases:

>100_bases
CTTCCGACGGAGACCTTCGATGAACGTATCGTCCTTCAATCGCCTGCGTGGCAACCATGCCGTTCGCGCCGGCGTCCTTG
CCTGCATGAGCGCCATTCCG

Product: outer membrane channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MIPQIIPHRWSCLCLVAASAALSAGCSLTPAYQRPVVSVPATFGSPQAASAPASGQPDANATAAVALNAQERAFLQAFAP
DRDLRPLIERALAHNGDFRRAALQVEQARAQYGIAQASRLPTLAVGAQQLRQHFDNPTLDARYQQDLVIANAGIGNLEVD
FFGKLQAMSEAARQRYLASTYGRDAARGALIAEVLRAYTAERATAQALQQLQSLDADSAALLAVAERQYQVGLIARDERD
AQRRQADQAHVTALQGNDNHAAAVRALQLLAGYDSTPVPGDLQGLIAADTPASAWHALDSSLLLQRPDIQQAELELRAAN
ADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGVWSFMPQLNLPLFDGGRNRANLDLAQVRERADVVAYEQAIEAAF
REVANALDAHATLSQAEPRSREQVEREQLRLARMHERVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF
YGVRLPTAS

Sequences:

>Translated_489_residues
MIPQIIPHRWSCLCLVAASAALSAGCSLTPAYQRPVVSVPATFGSPQAASAPASGQPDANATAAVALNAQERAFLQAFAP
DRDLRPLIERALAHNGDFRRAALQVEQARAQYGIAQASRLPTLAVGAQQLRQHFDNPTLDARYQQDLVIANAGIGNLEVD
FFGKLQAMSEAARQRYLASTYGRDAARGALIAEVLRAYTAERATAQALQQLQSLDADSAALLAVAERQYQVGLIARDERD
AQRRQADQAHVTALQGNDNHAAAVRALQLLAGYDSTPVPGDLQGLIAADTPASAWHALDSSLLLQRPDIQQAELELRAAN
ADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGVWSFMPQLNLPLFDGGRNRANLDLAQVRERADVVAYEQAIEAAF
REVANALDAHATLSQAEPRSREQVEREQLRLARMHERVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF
YGVRLPTAS
>Mature_489_residues
MIPQIIPHRWSCLCLVAASAALSAGCSLTPAYQRPVVSVPATFGSPQAASAPASGQPDANATAAVALNAQERAFLQAFAP
DRDLRPLIERALAHNGDFRRAALQVEQARAQYGIAQASRLPTLAVGAQQLRQHFDNPTLDARYQQDLVIANAGIGNLEVD
FFGKLQAMSEAARQRYLASTYGRDAARGALIAEVLRAYTAERATAQALQQLQSLDADSAALLAVAERQYQVGLIARDERD
AQRRQADQAHVTALQGNDNHAAAVRALQLLAGYDSTPVPGDLQGLIAADTPASAWHALDSSLLLQRPDIQQAELELRAAN
ADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGVWSFMPQLNLPLFDGGRNRANLDLAQVRERADVVAYEQAIEAAF
REVANALDAHATLSQAEPRSREQVEREQLRLARMHERVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF
YGVRLPTAS

Specific function: Probable outer membrane component of the sepABC efflux pump with unknown specificity [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=492, Percent_Identity=35.5691056910569, Blast_Score=222, Evalue=5e-59,
Organism=Escherichia coli, GI2367348, Length=185, Percent_Identity=29.7297297297297, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 52693; Mature: 52693

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPQIIPHRWSCLCLVAASAALSAGCSLTPAYQRPVVSVPATFGSPQAASAPASGQPDAN
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCCC
ATAAVALNAQERAFLQAFAPDRDLRPLIERALAHNGDFRRAALQVEQARAQYGIAQASRL
CEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
PTLAVGAQQLRQHFDNPTLDARYQQDLVIANAGIGNLEVDFFGKLQAMSEAARQRYLAST
CHHHHHHHHHHHHCCCCCCCCHHCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHH
YGRDAARGALIAEVLRAYTAERATAQALQQLQSLDADSAALLAVAERQYQVGLIARDERD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEECCHHH
AQRRQADQAHVTALQGNDNHAAAVRALQLLAGYDSTPVPGDLQGLIAADTPASAWHALDS
HHHHHCCHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHCH
SLLLQRPDIQQAELELRAANADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGVWSF
HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCCCEEECCCCCCCCCCHHHHHHCCCHHHHH
MPQLNLPLFDGGRNRANLDLAQVRERADVVAYEQAIEAAFREVANALDAHATLSQAEPRS
HCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
REQVEREQLRLARMHERVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGVRLPTAS
HHCCCCCCC
>Mature Secondary Structure
MIPQIIPHRWSCLCLVAASAALSAGCSLTPAYQRPVVSVPATFGSPQAASAPASGQPDAN
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCCC
ATAAVALNAQERAFLQAFAPDRDLRPLIERALAHNGDFRRAALQVEQARAQYGIAQASRL
CEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
PTLAVGAQQLRQHFDNPTLDARYQQDLVIANAGIGNLEVDFFGKLQAMSEAARQRYLAST
CHHHHHHHHHHHHCCCCCCCCHHCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHH
YGRDAARGALIAEVLRAYTAERATAQALQQLQSLDADSAALLAVAERQYQVGLIARDERD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEECCHHH
AQRRQADQAHVTALQGNDNHAAAVRALQLLAGYDSTPVPGDLQGLIAADTPASAWHALDS
HHHHHCCHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHCH
SLLLQRPDIQQAELELRAANADIGAARAAFFPSITLSSSVGTASDGLNGLFSAGHGVWSF
HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCCCEEECCCCCCCCCCHHHHHHCCCHHHHH
MPQLNLPLFDGGRNRANLDLAQVRERADVVAYEQAIEAAFREVANALDAHATLSQAEPRS
HCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
REQVEREQLRLARMHERVDAGLEDRSALLAERTRIAQTELDYLDTARQRVLSRIALFQAF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGVRLPTAS
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9037074 [H]