| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21243528
Identifier: 21243528
GI number: 21243528
Start: 3284277
End: 3285182
Strand: Reverse
Name: 21243528
Synonym: XAC2801
Alternate gene names: NA
Gene position: 3285182-3284277 (Counterclockwise)
Preceding gene: 21243529
Following gene: 21243527
Centisome position: 63.47
GC content: 66.23
Gene sequence:
>906_bases TTGCGCTGTTTCAGGCGTTCTATGGCGTGCGCCTGCCCACCGCTTCCTGACTTCCGACGGAGACCTTCGATGAACGTATC GTCCTTCAATCGCCTGCGTGGCAACCATGCCGTTCGCGCCGGCGTCCTTGCCTGCATGAGCGCCATTCCGTGCGTCGCGC ACGCACAAACCGATCTGACCGGGAGTTCGCGCCTGCTGGGAGACCGCACCGAGATCACGGCAGGCGCCGCAGCGGTTGCC ACGCCGGAGTATGCCGGCGCCGAGCGCGCGCGCGTGCAATTCAACCCGGTGCTGGTGGTGCAGCGCGGCGTGCTGTTCTT CGACACCTCCCGCGGCGGCGGCCTGCAATTCCAGAGCAAGTCCGGTTTCTACATATCGCAATCGCTGTATTACGACCTGG GACGGCTGCAAAGCGACAGCAACTGGCGGCCGGGCTCGCGCCTGCTGGCCGGCATGGGCGATGTGCCTGGCTCGGTGACG TCGCGCACGCTGGTGATGCAGCAAGTGACGCCCTACATGAACGTCAATGCGGAGGCGGAATTCACGCTCAAGGATGCTGC GCGCCGCAACCGCTATCGCGCCGGGATGGAGTTCACCCTGCTGCATAGCGCCAACGACACGGTCGCCCTGGACCTGGACG TGCATGGCGGCGACCGCCGCTTCAATCAGGCTTACTTCGGTGTCAGCGATGCGCAAGCCGCGCGCACCCGCTTTGCCGCC TTCAATGCCGGGTCCGGTGCGTATGCCGCCGCGGTAGGTGGCAGCTGGACGCACTCGCTGGGCGAGCACTGGGCCACCAC GGTGGGGGTCACCGGAACGCGCTACCTGGACAACGCCGAAGACAGCCCGCTGGTGGCACGCCGCAGCGTGGTGAGCGGCA ATCTCGCATTGACCTACAGCCGCTGA
Upstream 100 bases:
>100_bases GGTCTGGAAGACCGCAGCGCGCTGCTGGCCGAGCGGACCCGCATCGCTCAGACCGAACTCGATTACCTGGATACCGCACG CCAACGCGTGCTGAGCCGTA
Downstream 100 bases:
>100_bases GCGGCATACACCGGGGGATCGAATGATGACGATGTTTTATCGCGGCCTGGTGTGCGGCACGTTGCTGCTGGGACTGGCCG CATGCAGCGGGCCGGATGCG
Product: hypothetical protein
Products: NA
Alternate protein names: MipA Family Protein; MltA-Interacting MipA; Outer Membrane Protein; Conserved Protein; MipA Family MltA-Interacting Protein; Outer Membrane Protein Yiat
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MRCFRRSMACACPPLPDFRRRPSMNVSSFNRLRGNHAVRAGVLACMSAIPCVAHAQTDLTGSSRLLGDRTEITAGAAAVA TPEYAGAERARVQFNPVLVVQRGVLFFDTSRGGGLQFQSKSGFYISQSLYYDLGRLQSDSNWRPGSRLLAGMGDVPGSVT SRTLVMQQVTPYMNVNAEAEFTLKDAARRNRYRAGMEFTLLHSANDTVALDLDVHGGDRRFNQAYFGVSDAQAARTRFAA FNAGSGAYAAAVGGSWTHSLGEHWATTVGVTGTRYLDNAEDSPLVARRSVVSGNLALTYSR
Sequences:
>Translated_301_residues MRCFRRSMACACPPLPDFRRRPSMNVSSFNRLRGNHAVRAGVLACMSAIPCVAHAQTDLTGSSRLLGDRTEITAGAAAVA TPEYAGAERARVQFNPVLVVQRGVLFFDTSRGGGLQFQSKSGFYISQSLYYDLGRLQSDSNWRPGSRLLAGMGDVPGSVT SRTLVMQQVTPYMNVNAEAEFTLKDAARRNRYRAGMEFTLLHSANDTVALDLDVHGGDRRFNQAYFGVSDAQAARTRFAA FNAGSGAYAAAVGGSWTHSLGEHWATTVGVTGTRYLDNAEDSPLVARRSVVSGNLALTYSR >Mature_301_residues MRCFRRSMACACPPLPDFRRRPSMNVSSFNRLRGNHAVRAGVLACMSAIPCVAHAQTDLTGSSRLLGDRTEITAGAAAVA TPEYAGAERARVQFNPVLVVQRGVLFFDTSRGGGLQFQSKSGFYISQSLYYDLGRLQSDSNWRPGSRLLAGMGDVPGSVT SRTLVMQQVTPYMNVNAEAEFTLKDAARRNRYRAGMEFTLLHSANDTVALDLDVHGGDRRFNQAYFGVSDAQAARTRFAA FNAGSGAYAAAVGGSWTHSLGEHWATTVGVTGTRYLDNAEDSPLVARRSVVSGNLALTYSR
Specific function: Unknown
COG id: COG3713
COG function: function code M; Outer membrane protein V
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32578; Mature: 32578
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCFRRSMACACPPLPDFRRRPSMNVSSFNRLRGNHAVRAGVLACMSAIPCVAHAQTDLT CCHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCCC GSSRLLGDRTEITAGAAAVATPEYAGAERARVQFNPVLVVQRGVLFFDTSRGGGLQFQSK CCCCCCCCCHHCCCCCCEECCCCCCCCCCCEEEECEEEEEECCEEEEECCCCCCEEEECC SGFYISQSLYYDLGRLQSDSNWRPGSRLLAGMGDVPGSVTSRTLVMQQVTPYMNVNAEAE CCEEEEHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEE FTLKDAARRNRYRAGMEFTLLHSANDTVALDLDVHGGDRRFNQAYFGVSDAQAARTRFAA EEHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHEE FNAGSGAYAAAVGGSWTHSLGEHWATTVGVTGTRYLDNAEDSPLVARRSVVSGNLALTYS EECCCCCEEEECCCCHHHHHHHHHHEEECCCCCEECCCCCCCCHHHHHHEECCCEEEEEC R C >Mature Secondary Structure MRCFRRSMACACPPLPDFRRRPSMNVSSFNRLRGNHAVRAGVLACMSAIPCVAHAQTDLT CCHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCCC GSSRLLGDRTEITAGAAAVATPEYAGAERARVQFNPVLVVQRGVLFFDTSRGGGLQFQSK CCCCCCCCCHHCCCCCCEECCCCCCCCCCCEEEECEEEEEECCEEEEECCCCCCEEEECC SGFYISQSLYYDLGRLQSDSNWRPGSRLLAGMGDVPGSVTSRTLVMQQVTPYMNVNAEAE CCEEEEHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEE FTLKDAARRNRYRAGMEFTLLHSANDTVALDLDVHGGDRRFNQAYFGVSDAQAARTRFAA EEHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHEE FNAGSGAYAAAVGGSWTHSLGEHWATTVGVTGTRYLDNAEDSPLVARRSVVSGNLALTYS EECCCCCEEEECCCCHHHHHHHHHHEEECCCCCEECCCCCCCCHHHHHHEECCCEEEEEC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA