| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yhiN [H]
Identifier: 21243131
GI number: 21243131
Start: 2791838
End: 2793019
Strand: Direct
Name: yhiN [H]
Synonym: XAC2397
Alternate gene names: 21243131
Gene position: 2791838-2793019 (Clockwise)
Preceding gene: 21243130
Following gene: 21243132
Centisome position: 53.94
GC content: 64.97
Gene sequence:
>1182_bases ATGAGCATGCGTTGCGACGTGCTGGTCATCGGCGCCGGCGCTGCCGGACTGATGAGCGCCCTTACTGCCGGCCAGCGCGG CCGCAAGGTGCTGGTGATCGATCATGCCAACAAGGTCGGCAAGAAGATCCTGATGTCCGGTGGCGGGCGTTGCAATTTCA CCAACACCGGCACCACGCCTGGCAACTTCATTTCGGCCAATCGGCATTTCTGCAAATCCGCACTGGCGCGCTACAGCCCG GCGGATTTTGTGGAGATGGTCCAACGTCATGCCATCGCCTATCACGAGAAAGAGCTGGGCCAGTTGTTCTGCGACATCTC CTCCAAGCAGATCGTGCGCATGCTGCTGGACGAATGCGATGCGGCCGGCGCGCAGATCCGCACCCAGTGCGATGTGCTGT CGGTCCAGCGCGGCAGCGAGGGCTTCGAGGTCCAGACCAGCCAGGGAGGCGTGCAGGCGCAGTCGTTGATCGTGGCAACC GGGGGGCTGTCGATCCCCAGCATGGGGGCCAGCGGCTTCGGCTATACCTTGGCCAAGCAGTTTGGCCATGCGCTAGTGCC CACCCGCGCCGGGCTGGTGCCACTCACGCTGAGCGGCACGCATCAGGAGCGTCTGCAAGCGTTGTCCGGGCTGGCGTTGC CGGTCCAGGCGCAGTGCAATGGGGTCAGCTTTCGCAATTTCATGCTGCTCACCCATCGCGGGGTCAGCGGCCCGGCGATC CTGCAGATTTCCTCGTATTGGCAGCCGGGCGACGACTTGCGGCTGGATCTGCTGCCCGGTCGCGATGCAGCGACATGGCT GCGCGAACAAAAGCAGCAACGCGGCGCCACCGAGCTGCGCAACGTGCTGGCCGACGTGCTGCCGAAACGGTTTGCACAAC GCTTGTGCGAGATATGGCTGCCAGACAAGCCGGTGCGGCAGCTGGATCCGCCGCAGCTGAAAGCCGCCGCCGACCTGCTC GGCAGCTTTCCGCTGATCGCCAGCGGCACCGAAGGCTATCGGACGGCTGAAGTCACCCTGGGCGGGGTCGATACCCACCA AGTCTCCAGTGCGACCATGGAGTCGCGTCTGGTGGCGGGCCTGTACTTCGTCGGTGAGGTGCTGGATGTCACCGGCTGGC TGGGCGGCTACAACTTCCAGTGGGCGTGGGCGTCCGGCCATGCAGCGGGGAGCGTGGCGTAA
Upstream 100 bases:
>100_bases GCATGCGTTTCGACGTGATCATTCAGGACGGCGAAGTGCAGATGCTGGCCGACCACGGCAGCGTCACCCTGACCCCGATG GTGCGGCAAGCCCCGGCCGA
Downstream 100 bases:
>100_bases CGCCGATGGCGAGGAGTTGCTGGTCGCCCACCGATCACGTCAGGCGCCTTGAACGCGCGGTCGCGGCATGGGCAGCACGC GGTGAAAACGGTCGATGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MSMRCDVLVIGAGAAGLMSALTAGQRGRKVLVIDHANKVGKKILMSGGGRCNFTNTGTTPGNFISANRHFCKSALARYSP ADFVEMVQRHAIAYHEKELGQLFCDISSKQIVRMLLDECDAAGAQIRTQCDVLSVQRGSEGFEVQTSQGGVQAQSLIVAT GGLSIPSMGASGFGYTLAKQFGHALVPTRAGLVPLTLSGTHQERLQALSGLALPVQAQCNGVSFRNFMLLTHRGVSGPAI LQISSYWQPGDDLRLDLLPGRDAATWLREQKQQRGATELRNVLADVLPKRFAQRLCEIWLPDKPVRQLDPPQLKAAADLL GSFPLIASGTEGYRTAEVTLGGVDTHQVSSATMESRLVAGLYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA
Sequences:
>Translated_393_residues MSMRCDVLVIGAGAAGLMSALTAGQRGRKVLVIDHANKVGKKILMSGGGRCNFTNTGTTPGNFISANRHFCKSALARYSP ADFVEMVQRHAIAYHEKELGQLFCDISSKQIVRMLLDECDAAGAQIRTQCDVLSVQRGSEGFEVQTSQGGVQAQSLIVAT GGLSIPSMGASGFGYTLAKQFGHALVPTRAGLVPLTLSGTHQERLQALSGLALPVQAQCNGVSFRNFMLLTHRGVSGPAI LQISSYWQPGDDLRLDLLPGRDAATWLREQKQQRGATELRNVLADVLPKRFAQRLCEIWLPDKPVRQLDPPQLKAAADLL GSFPLIASGTEGYRTAEVTLGGVDTHQVSSATMESRLVAGLYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA >Mature_392_residues SMRCDVLVIGAGAAGLMSALTAGQRGRKVLVIDHANKVGKKILMSGGGRCNFTNTGTTPGNFISANRHFCKSALARYSPA DFVEMVQRHAIAYHEKELGQLFCDISSKQIVRMLLDECDAAGAQIRTQCDVLSVQRGSEGFEVQTSQGGVQAQSLIVATG GLSIPSMGASGFGYTLAKQFGHALVPTRAGLVPLTLSGTHQERLQALSGLALPVQAQCNGVSFRNFMLLTHRGVSGPAIL QISSYWQPGDDLRLDLLPGRDAATWLREQKQQRGATELRNVLADVLPKRFAQRLCEIWLPDKPVRQLDPPQLKAAADLLG SFPLIASGTEGYRTAEVTLGGVDTHQVSSATMESRLVAGLYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0933 [H]
Homologues:
Organism=Escherichia coli, GI2367234, Length=387, Percent_Identity=54.5219638242894, Blast_Score=409, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 - InterPro: IPR023166 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 42053; Mature: 41921
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMRCDVLVIGAGAAGLMSALTAGQRGRKVLVIDHANKVGKKILMSGGGRCNFTNTGTTP CCCEEEEEEECCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCCC GNFISANRHFCKSALARYSPADFVEMVQRHAIAYHEKELGQLFCDISSKQIVRMLLDECD CCEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC AAGAQIRTQCDVLSVQRGSEGFEVQTSQGGVQAQSLIVATGGLSIPSMGASGFGYTLAKQ CCCCHHEHHHHEEEECCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHH FGHALVPTRAGLVPLTLSGTHQERLQALSGLALPVQAQCNGVSFRNFMLLTHRGVSGPAI CCCEECCCCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEECCCCCCEE LQISSYWQPGDDLRLDLLPGRDAATWLREQKQQRGATELRNVLADVLPKRFAQRLCEIWL EEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC PDKPVRQLDPPQLKAAADLLGSFPLIASGTEGYRTAEVTLGGVDTHQVSSATMESRLVAG CCCCHHCCCCHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH LYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC >Mature Secondary Structure SMRCDVLVIGAGAAGLMSALTAGQRGRKVLVIDHANKVGKKILMSGGGRCNFTNTGTTP CCEEEEEEECCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCCC GNFISANRHFCKSALARYSPADFVEMVQRHAIAYHEKELGQLFCDISSKQIVRMLLDECD CCEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC AAGAQIRTQCDVLSVQRGSEGFEVQTSQGGVQAQSLIVATGGLSIPSMGASGFGYTLAKQ CCCCHHEHHHHEEEECCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHH FGHALVPTRAGLVPLTLSGTHQERLQALSGLALPVQAQCNGVSFRNFMLLTHRGVSGPAI CCCEECCCCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEECCCCCCEE LQISSYWQPGDDLRLDLLPGRDAATWLREQKQQRGATELRNVLADVLPKRFAQRLCEIWL EEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC PDKPVRQLDPPQLKAAADLLGSFPLIASGTEGYRTAEVTLGGVDTHQVSSATMESRLVAG CCCCHHCCCCHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH LYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]