BacMap

Definition	Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome.
Accession	NC_003919
Length	5,175,554

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The map label for this gene is hbdH1 [H]

Identifier: 21242789

GI number: 21242789

Start: 2390001

End: 2390759

Strand: Reverse

Name: hbdH1 [H]

Synonym: XAC2045

Alternate gene names: 21242789

Gene position: 2390759-2390001 (Counterclockwise)

Preceding gene: 21242795

Following gene: 21242785

Centisome position: 46.19

GC content: 66.93

Gene sequence:

>759_bases
ATGCACAGCATCCTGATCACCGGCGCGGGCAGCGGCATTGGCGCCGGTATCGCCACCCAACTGGCGGCCGACGGCCATCA
TCTGCTCGTCAGCGATGTGCAGCTGGCGGCCGCCGAGCGCACGGCGGATGCGTTGCGCCAGGCAGGCGGCTCGGCGGAGG
CGCTGGCGTTGGACGTGACCGATGCAGACAGCATCGCGCAGGCACTGGCCAGTGCATCACGCGCCCCGCAGGTACTGGTG
AACAACGCCGGCCTGCAGCATGTGGCCGCACTTGAGGAGTTCCCGATGCAGCAGTGGGCGCTGCTGGTGGATGTGATGCT
CACCGGCGCCGCACGCCTCAGTCGCGCCGTGCTGCCCGGCATGCGCGCGGCCGGCTATGGCCGCATCGTCAATATCGGCA
GCATCCACTCGCTGGTGGCCAGCCCATACAAAAGTGCGTATGTGGCCGCCAAGCATGGCCTGGTCGGCCTGGCCAAAGTC
ATCGCGCTGGAAACCGCCGATTGCGACATCACCGTCAACACGCTCTGCCCCAGCTATGTGCGTACGCCGCTGGTGGAACG
GCAGATTGCCGATCAGGCGCGCATCCGCGGCATCACCGAGGACGCCGTGGTGCGCGATGTGATGCTCAAGCCGATGCCCA
AGGGCGCCTTCATCGACTACGACGAGCTGGCCGGCACCGTGGCGTTTCTGATGTCGCATGCCGCCCGCAATATCACCGGG
CAAGCCCTCGCCATCGATGGGGGCTGGACGGCACAATGA

Upstream 100 bases:

>100_bases
AACGCGCGCGCGCCATGCAGGCGACCGTTTCGCTGCACTCGGCTAGGCTGGCGATCCGCGTGACCGCTCCCGGCCGCGCA
CGACTTCACGAGGACATCCG

Downstream 100 bases:

>100_bases
TCACGCTGGCGAAATTTTGACCAGCCGCCACGCGTACCAGATGGCATAAGGGGGCCGCGCACTTGTCCACAGACTTGCGC
AGCGTCCATCCACAGGGGGT

Product: D-beta-hydroxybutyrate dehydrogenase

Products: NA

Alternate protein names: BDH; 3-hydroxybutyrate dehydrogenase; 3-HBDH [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MHSILITGAGSGIGAGIATQLAADGHHLLVSDVQLAAAERTADALRQAGGSAEALALDVTDADSIAQALASASRAPQVLV
NNAGLQHVAALEEFPMQQWALLVDVMLTGAARLSRAVLPGMRAAGYGRIVNIGSIHSLVASPYKSAYVAAKHGLVGLAKV
IALETADCDITVNTLCPSYVRTPLVERQIADQARIRGITEDAVVRDVMLKPMPKGAFIDYDELAGTVAFLMSHAARNITG
QALAIDGGWTAQ

Sequences:

>Translated_252_residues
MHSILITGAGSGIGAGIATQLAADGHHLLVSDVQLAAAERTADALRQAGGSAEALALDVTDADSIAQALASASRAPQVLV
NNAGLQHVAALEEFPMQQWALLVDVMLTGAARLSRAVLPGMRAAGYGRIVNIGSIHSLVASPYKSAYVAAKHGLVGLAKV
IALETADCDITVNTLCPSYVRTPLVERQIADQARIRGITEDAVVRDVMLKPMPKGAFIDYDELAGTVAFLMSHAARNITG
QALAIDGGWTAQ
>Mature_252_residues
MHSILITGAGSGIGAGIATQLAADGHHLLVSDVQLAAAERTADALRQAGGSAEALALDVTDADSIAQALASASRAPQVLV
NNAGLQHVAALEEFPMQQWALLVDVMLTGAARLSRAVLPGMRAAGYGRIVNIGSIHSLVASPYKSAYVAAKHGLVGLAKV
IALETADCDITVNTLCPSYVRTPLVERQIADQARIRGITEDAVVRDVMLKPMPKGAFIDYDELAGTVAFLMSHAARNITG
QALAIDGGWTAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=30.46875, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=28.2258064516129, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI7657478, Length=185, Percent_Identity=33.5135135135135, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI66933014, Length=231, Percent_Identity=28.1385281385281, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=28.9156626506024, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=28.9340101522843, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI4504505, Length=184, Percent_Identity=29.3478260869565, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI223718074, Length=167, Percent_Identity=35.3293413173653, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI210032110, Length=212, Percent_Identity=27.3584905660377, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=29.5546558704453, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI142976729, Length=190, Percent_Identity=28.4210526315789, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI40807363, Length=231, Percent_Identity=26.8398268398268, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=24.4094488188976, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI150247226, Length=192, Percent_Identity=30.2083333333333, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI19743808, Length=186, Percent_Identity=31.7204301075269, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=25, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI126723191, Length=175, Percent_Identity=29.7142857142857, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=22.9946524064171, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=27.8606965174129, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=37.0517928286853, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=34.2741935483871, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=31.3253012048193, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=27.8225806451613, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=28.1746031746032, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=29.296875, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=28.2258064516129, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=28.0155642023346, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786701, Length=184, Percent_Identity=28.2608695652174, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787820, Length=140, Percent_Identity=32.1428571428571, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=33.0645161290323, Blast_Score=118, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=27.4900398406374, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17568967, Length=183, Percent_Identity=30.0546448087432, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=236, Percent_Identity=27.1186440677966, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=259, Percent_Identity=27.027027027027, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=259, Percent_Identity=27.027027027027, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=27.1317829457364, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=26.1538461538462, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=242, Percent_Identity=24.7933884297521, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=201, Percent_Identity=26.865671641791, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=23.7154150197628, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=201, Percent_Identity=26.865671641791, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=193, Percent_Identity=26.9430051813472, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=23.1372549019608, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=26.3779527559055, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=26.7175572519084, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=185, Percent_Identity=36.2162162162162, Blast_Score=101, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=30.2788844621514, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=34, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=31.2252964426877, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI18859837, Length=183, Percent_Identity=32.2404371584699, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=30.8300395256917, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=27.7777777777778, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=27.710843373494, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24649181, Length=186, Percent_Identity=30.6451612903226, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356301, Length=229, Percent_Identity=27.9475982532751, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21358495, Length=246, Percent_Identity=23.9837398373984, Blast_Score=71, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.30 [H]

Molecular weight: Translated: 26125; Mature: 26125

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSILITGAGSGIGAGIATQLAADGHHLLVSDVQLAAAERTADALRQAGGSAEALALDVT
CCEEEEEECCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
DADSIAQALASASRAPQVLVNNAGLQHVAALEEFPMQQWALLVDVMLTGAARLSRAVLPG
CHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
MRAAGYGRIVNIGSIHSLVASPYKSAYVAAKHGLVGLAKVIALETADCDITVNTLCPSYV
CCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHCCHHHH
RTPLVERQIADQARIRGITEDAVVRDVMLKPMPKGAFIDYDELAGTVAFLMSHAARNITG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
QALAIDGGWTAQ
CEEEECCCCCCC
>Mature Secondary Structure
MHSILITGAGSGIGAGIATQLAADGHHLLVSDVQLAAAERTADALRQAGGSAEALALDVT
CCEEEEEECCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
DADSIAQALASASRAPQVLVNNAGLQHVAALEEFPMQQWALLVDVMLTGAARLSRAVLPG
CHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
MRAAGYGRIVNIGSIHSLVASPYKSAYVAAKHGLVGLAKVIALETADCDITVNTLCPSYV
CCCCCCCCEEECCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCCEEHHHCCHHHH
RTPLVERQIADQARIRGITEDAVVRDVMLKPMPKGAFIDYDELAGTVAFLMSHAARNITG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
QALAIDGGWTAQ
CEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9922248; 11481431 [H]