| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is sam [H]
Identifier: 21242548
GI number: 21242548
Start: 2076829
End: 2077740
Strand: Reverse
Name: sam [H]
Synonym: XAC1803
Alternate gene names: 21242548
Gene position: 2077740-2076829 (Counterclockwise)
Preceding gene: 21242549
Following gene: 21242547
Centisome position: 40.15
GC content: 65.35
Gene sequence:
>912_bases TTGGTGACGCCAGCGCAGGTTGCGCGGCGAGCCGCGCTGTGGATGCTCACCAGTACCGTCGCCTTCGGGCTGATGGCAAT CACCATCCGCCTGGCCTCGAGCACCATTGCCACCGCCGAGATCGCATTTTTCCGCAATGCGTTCGGGTTGCTGGCGTTGT TGCCGTTGATCCTGCGGCCGGGCAAGCCGCTGCCGCGCACGCGGCAATTGCCGCAGTACTTCGCCCGTACCTTGATCGGC CTGGCCTCGATGCTGTGCGGGTTTTGGGCGATCGGCCATCTACCCCTGTCGCAGGCCATCTCGCTCTCCTACTCCACGCC GTTATTCGTCACGGTGCTGGCAGTGGTGTGGCTGCATGAGCAGGTACGGCTGCGGCGCTGGCTGGCGGTGGCGGCCGGTT TTATCGGCGTGCTGGTGATCCTGCGGCCGGGCTCGTCCACGTTCACGCCCGGCTTGCTGATTGCGCTGCTGGCTGCGGTC ATCAGCGCCATCGTCGCGATCCAGATCAAACAGCTCTCGCGCAGCGACGACTCCGACACGGTGGTGTTCTACACCTACGT GTTCTGGGTGCCGATGTCGCTGATCCCGGCGCTGTTCCAATGGACATGGCCGCAGGGCATCGGCTGGGTATGGCTGGTGG CCACTGGCATCTTCGGCACCGCCGGGCAGTTGTTCTGGACGCGCGCACTCAAGCTGGGCGAAGTCTCTGCGCTGCAGCCG ATCAGCTTCATGCAACTGCCGTTGGTGGCGCTGCTGGGTTGGTGGCTGTTCGGCGAGGCGATCGAACGCCACACCGTGAT CGGTGCGGCCATCATCATCGGTGCCAACGTCTATATCGCCCATCGCGAAACCGTGCTGGCACGCCGCGCCGCCACGCACG CACCGGTGGAAGGCGCCAAGCCGGGCGAGTGA
Upstream 100 bases:
>100_bases CGGGCGCGCAGTTGCTGGATTTCGCACGACGCATCGCCGAGTCGGTGCGCGAGCGCTATTCGGTGATTCTGGAGCCGGAA CCGCGCATCATCGGGGCGCA
Downstream 100 bases:
>100_bases GCCGAGATCCTGAGCTGCCGGAGCGCGATCGGGAACGTATCCGGTCGGGACCGCCGACATACACTTCAGTCCCCAAGCGC AACGCACGCTGCGTGCCGTC
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MVTPAQVARRAALWMLTSTVAFGLMAITIRLASSTIATAEIAFFRNAFGLLALLPLILRPGKPLPRTRQLPQYFARTLIG LASMLCGFWAIGHLPLSQAISLSYSTPLFVTVLAVVWLHEQVRLRRWLAVAAGFIGVLVILRPGSSTFTPGLLIALLAAV ISAIVAIQIKQLSRSDDSDTVVFYTYVFWVPMSLIPALFQWTWPQGIGWVWLVATGIFGTAGQLFWTRALKLGEVSALQP ISFMQLPLVALLGWWLFGEAIERHTVIGAAIIIGANVYIAHRETVLARRAATHAPVEGAKPGE
Sequences:
>Translated_303_residues MVTPAQVARRAALWMLTSTVAFGLMAITIRLASSTIATAEIAFFRNAFGLLALLPLILRPGKPLPRTRQLPQYFARTLIG LASMLCGFWAIGHLPLSQAISLSYSTPLFVTVLAVVWLHEQVRLRRWLAVAAGFIGVLVILRPGSSTFTPGLLIALLAAV ISAIVAIQIKQLSRSDDSDTVVFYTYVFWVPMSLIPALFQWTWPQGIGWVWLVATGIFGTAGQLFWTRALKLGEVSALQP ISFMQLPLVALLGWWLFGEAIERHTVIGAAIIIGANVYIAHRETVLARRAATHAPVEGAKPGE >Mature_303_residues MVTPAQVARRAALWMLTSTVAFGLMAITIRLASSTIATAEIAFFRNAFGLLALLPLILRPGKPLPRTRQLPQYFARTLIG LASMLCGFWAIGHLPLSQAISLSYSTPLFVTVLAVVWLHEQVRLRRWLAVAAGFIGVLVILRPGSSTFTPGLLIALLAAV ISAIVAIQIKQLSRSDDSDTVVFYTYVFWVPMSLIPALFQWTWPQGIGWVWLVATGIFGTAGQLFWTRALKLGEVSALQP ISFMQLPLVALLGWWLFGEAIERHTVIGAAIIIGANVYIAHRETVLARRAATHAPVEGAKPGE
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
Organism=Homo sapiens, GI23397492, Length=267, Percent_Identity=24.3445692883895, Blast_Score=65, Evalue=9e-11, Organism=Homo sapiens, GI197927233, Length=267, Percent_Identity=24.3445692883895, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33065; Mature: 33065
Theoretical pI: Translated: 11.34; Mature: 11.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTPAQVARRAALWMLTSTVAFGLMAITIRLASSTIATAEIAFFRNAFGLLALLPLILRP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GKPLPRTRQLPQYFARTLIGLASMLCGFWAIGHLPLSQAISLSYSTPLFVTVLAVVWLHE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHH QVRLRRWLAVAAGFIGVLVILRPGSSTFTPGLLIALLAAVISAIVAIQIKQLSRSDDSDT HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE VVFYTYVFWVPMSLIPALFQWTWPQGIGWVWLVATGIFGTAGQLFWTRALKLGEVSALQP EEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHCCC ISFMQLPLVALLGWWLFGEAIERHTVIGAAIIIGANVYIAHRETVLARRAATHAPVEGAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEEEHHHHHHHHHHHCCCCCCCCC PGE CCC >Mature Secondary Structure MVTPAQVARRAALWMLTSTVAFGLMAITIRLASSTIATAEIAFFRNAFGLLALLPLILRP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GKPLPRTRQLPQYFARTLIGLASMLCGFWAIGHLPLSQAISLSYSTPLFVTVLAVVWLHE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHH QVRLRRWLAVAAGFIGVLVILRPGSSTFTPGLLIALLAAVISAIVAIQIKQLSRSDDSDT HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE VVFYTYVFWVPMSLIPALFQWTWPQGIGWVWLVATGIFGTAGQLFWTRALKLGEVSALQP EEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHCCC ISFMQLPLVALLGWWLFGEAIERHTVIGAAIIIGANVYIAHRETVLARRAATHAPVEGAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEEEHHHHHHHHHHHCCCCCCCCC PGE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA