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The map label for this gene is recO

Identifier: 21242080

GI number: 21242080

Start: 1532354

End: 1533076

Strand: Direct

Name: recO

Synonym: XAC1327

Alternate gene names: 21242080

Gene position: 1532354-1533076 (Clockwise)

Preceding gene: 21242079

Following gene: 21242082

Centisome position: 29.61

GC content: 68.6

Gene sequence:

>723_bases
ATGCTGATCGAGCACGAGCGCGGGTTCGTGCTGCATGTACGGGCCTGGCGCGAGACCAGCCTGCTGGTGGAAGTGCTGAC
CGAGCAACACGGGCGGGTGGGGCTGCTGGCGCGCGGTGTGCAGGGGCCGCGCAAGCAGGCGCTGCGCGCGGCTTTGCAGC
CCTTGCAGCTGATCCAGTTCAGTGCCGTGCAGCGCGGCGAGCTGGCCCAACTGCGCCAGGCCGAAGCCCTGGATACCGCG
CCGCGGCTAGCCGGCGACACCATGCTGGCCGGTTTCTACATCGGCGAATTGTTGCTGCGCCTGGCGCCGCGTCACGATCC
AGTGCCCGAACTTTATGCCTGTTATGCGCAGGCACGTCGCCACCTGGCCTCCGATCTGCCGTTGGCGTGGGGCCTGCGCC
GGTTCGAGCGCGACGTGCTGGAGGGGCTGGGGTTCGCTTTCGATCTGCAGCACGACAGCGAGGGGCAACCGATCGACCCG
GCAGCACGATATCGGCTGGATCCGCAGGACGGCGCCTTGCGCGTGTTGAGCGAACGGCTAGCTCAGGATCGCCGCGAAAC
CGTCACCGGTGCGGCGCTGCTGGCGCTGGGCCAAGACGTCATGCCGGACGCGGACGACATGCCCGGCCTGCGGCGCAGCA
TGCGCGGCGTGCTGCTGCATCATCTGGGCGGGCGTGGCCTGAAATCCTGGGAAATGCTCGAGGATCTCGCGCGCCGTCGT
TGA

Upstream 100 bases:

>100_bases
GCTCGGCGCTCGATCGCCGCGCCGCGCGGCACTTCGACGGCCGATCCGGCGCTTTTCCAGGGTCCCCGGTCCCGGATCCC
CAATCCCGGCTTTCCCTCCC

Downstream 100 bases:

>100_bases
TGGCGCGGAGCGCTGGACGCGCATGCGCGATTGCGCCGGCAAAAGTCCAGCTGCGGCCGGCGATACCACGACCCAGCAGC
GAATTGAGCGAAGCGGGTAC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQFSAVQRGELAQLRQAEALDTA
PRLAGDTMLAGFYIGELLLRLAPRHDPVPELYACYAQARRHLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDP
AARYRLDPQDGALRVLSERLAQDRRETVTGAALLALGQDVMPDADDMPGLRRSMRGVLLHHLGGRGLKSWEMLEDLARRR

Sequences:

>Translated_240_residues
MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQFSAVQRGELAQLRQAEALDTA
PRLAGDTMLAGFYIGELLLRLAPRHDPVPELYACYAQARRHLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDP
AARYRLDPQDGALRVLSERLAQDRRETVTGAALLALGQDVMPDADDMPGLRRSMRGVLLHHLGGRGLKSWEMLEDLARRR
>Mature_240_residues
MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQFSAVQRGELAQLRQAEALDTA
PRLAGDTMLAGFYIGELLLRLAPRHDPVPELYACYAQARRHLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDP
AARYRLDPQDGALRVLSERLAQDRRETVTGAALLALGQDVMPDADDMPGLRRSMRGVLLHHLGGRGLKSWEMLEDLARRR

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

Organism=Escherichia coli, GI2367140, Length=238, Percent_Identity=36.9747899159664, Blast_Score=127, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_XANAC (Q8PMU8)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_641662.1
- ProteinModelPortal:   Q8PMU8
- GeneID:   1155398
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC1327
- NMPDR:   fig|190486.1.peg.1306
- HOGENOM:   HBG645116
- OMA:   SILQPFQ
- ProtClustDB:   PRK00085
- BioCyc:   XAXO190486:XAC1327-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26935; Mature: 26935

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQF
CCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHH
SAVQRGELAQLRQAEALDTAPRLAGDTMLAGFYIGELLLRLAPRHDPVPELYACYAQARR
HHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDPAARYRLDPQDGALRVLSERL
HHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHH
AQDRRETVTGAALLALGQDVMPDADDMPGLRRSMRGVLLHHLGGRGLKSWEMLEDLARRR
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MLIEHERGFVLHVRAWRETSLLVEVLTEQHGRVGLLARGVQGPRKQALRAALQPLQLIQF
CCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHH
SAVQRGELAQLRQAEALDTAPRLAGDTMLAGFYIGELLLRLAPRHDPVPELYACYAQARR
HHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDPAARYRLDPQDGALRVLSERL
HHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHHHHH
AQDRRETVTGAALLALGQDVMPDADDMPGLRRSMRGVLLHHLGGRGLKSWEMLEDLARRR
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217