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The map label for this gene is hrpXct [H]

Identifier: 21242019

GI number: 21242019

Start: 1446457

End: 1447887

Strand: Direct

Name: hrpXct [H]

Synonym: XAC1266

Alternate gene names: 21242019

Gene position: 1446457-1447887 (Clockwise)

Preceding gene: 21242017

Following gene: 21242020

Centisome position: 27.95

GC content: 64.5

Gene sequence:

>1431_bases
ATGATCCTTTCCACTTACTTTGCAGCGATCTCTGCGTTGTCCTACGCAGAACGTCTTCCTACGTATACGAGCAGGATGCT
GGTTGGTGCTTGGCCACAGGGACTGCAACATCTCCAACAGCGACGCGACGGACAGGGCGCTGTGGATGGCGCCGATGATG
AGGTCAGTTTGTTCGGTGCCAGCGGCGATGCGTTGCTGATCCTGGAATATCAGGAAGAGGCCGAAGATGCGTATCGGCAG
GCCTTGAAGGCAATGCGCGGGCATCAGCGCCAATTGCGCCTGCTGTCGTGCAGGAACACCGCCTGGTTGATGCTGAGCCA
GCGGCGCCTGAGCGCGGCGTTGAATTGCTTTGCGCAGTTGGCAATGGACCGCGAAACGTCGCCCAGCCTGTGCGGCGAGA
GCCTGCTGGGCAAGTCGCTGACCCACTTCCATCTCGGCCAGAGTACGTTGGCCTTGCAGACCCTGGAGCGCGCCAGCGAG
GTGCTGGCCGACCTGGAGAGCGGGGCGTCGGAATGGCTGCGGATCGCCAATGCGCTGCGTCTGGACATGATTGCGCAGCT
GCGTATCCGTCGCTCCGATCGCATGAGCGACCATGTGTTCTGGCAAGCCACGCTGCGCCAGGAAGATGCCGCGCATGCCT
TCGAGCCCAGCGACCTGCGCGCCTGCATCGCCGATCTGGCAGAAAGCATGCCGGTGCTGGCGCAGCGCATGCGGCATGTG
CGTAGCCTGCTGCGTATTGCCGGTGGCGACACCTTCGGCTTCGACGCGCAGATCGACGCATTGCCGGCCGCGGCCACCGG
CTGCCCGCCGTGCGCGCGTCAGGACGCGCAGGTGGAGCTGGCGCTGGCGGCATTGGCGGTGGGCCGTGCCGATCTTGCCG
AGCGTGCGCTGGCCGGCGCCGGTCGGCATCATGCGCCGCGCTGGAATCTGGAGTTCGAGTACTGCCAGGCCAAGATCAGC
CAGGCGATGGGGCGCACCGAACAAGCGTTACTGCTCTACAACCGCTACGCGCTGGACGCGGTGCAGTGTCTGCGCAGCGA
AGTGCAAGCGCCGCGCTTGCTGGAAAGCGGCACACCGGCCCACGTCAGCGACGATATCTCCGCCCGGTTGCCGGCCAAGT
ATCGACGCGCCTACAGCTACATGATCACCAATGCGCATCGCTCGGATCTGTCGATCAACGAAGTGGCCGCACAGATCGGA
GTCACCGGGCGCGCGCTGCAGCAAGCCTTCAAGTCGGCTACCGGGCTATCGCCGACGCAGGTGCTGCGCCGTTACCGGAT
GCAAAGCATCCGCGACGAACTGCTGGCCGAAGGCGGCTGCGGCAGTGTGTTGCAGGCGGCCAGTCGTTGGGGCGTCGGTA
GTCGTTCGGCGTTGGCCAAGGGCTATCGCCAGCACTTCAATGAAGCGCCGATGGAGACCTTGCAGCGGTAA

Upstream 100 bases:

>100_bases
TCAGAGAGAAATTCTATTGGATCCGCTGCATACAATCGTTTGCGCCAGCGAGTTAGGCGCCTGTTGTCTTTTGCTCCGCC
CCCCAAAGAGAGAGACCGGC

Downstream 100 bases:

>100_bases
TTTCCGCAACCCACGGATTGGTAGCGCTACCGATCCGTGGTGGGTCAACCCGACGCGGTGCAGTGCGCGTCGCTGTGCGC
AACGGAGGGCAGGGGCCAAA

Product: HrpX protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAVDGADDEVSLFGASGDALLILEYQEEAEDAYRQ
ALKAMRGHQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQLAMDRETSPSLCGESLLGKSLTHFHLGQSTLALQTLERASE
VLADLESGASEWLRIANALRLDMIAQLRIRRSDRMSDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
RSLLRIAGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGAGRHHAPRWNLEFEYCQAKIS
QAMGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPAHVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIG
VTGRALQQAFKSATGLSPTQVLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR

Sequences:

>Translated_476_residues
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAVDGADDEVSLFGASGDALLILEYQEEAEDAYRQ
ALKAMRGHQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQLAMDRETSPSLCGESLLGKSLTHFHLGQSTLALQTLERASE
VLADLESGASEWLRIANALRLDMIAQLRIRRSDRMSDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
RSLLRIAGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGAGRHHAPRWNLEFEYCQAKIS
QAMGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPAHVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIG
VTGRALQQAFKSATGLSPTQVLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR
>Mature_476_residues
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAVDGADDEVSLFGASGDALLILEYQEEAEDAYRQ
ALKAMRGHQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQLAMDRETSPSLCGESLLGKSLTHFHLGQSTLALQTLERASE
VLADLESGASEWLRIANALRLDMIAQLRIRRSDRMSDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
RSLLRIAGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGAGRHHAPRWNLEFEYCQAKIS
QAMGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPAHVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIG
VTGRALQQAFKSATGLSPTQVLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR

Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 52468; Mature: 52468

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAVDGADDEVSLFGA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
SGDALLILEYQEEAEDAYRQALKAMRGHQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQL
CCCEEEEEECHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AMDRETSPSLCGESLLGKSLTHFHLGQSTLALQTLERASEVLADLESGASEWLRIANALR
HHCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDMIAQLRIRRSDRMSDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RSLLRIAGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GRHHAPRWNLEFEYCQAKISQAMGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPA
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
HVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQ
CCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
VLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAVDGADDEVSLFGA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
SGDALLILEYQEEAEDAYRQALKAMRGHQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQL
CCCEEEEEECHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AMDRETSPSLCGESLLGKSLTHFHLGQSTLALQTLERASEVLADLESGASEWLRIANALR
HHCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDMIAQLRIRRSDRMSDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RSLLRIAGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GRHHAPRWNLEFEYCQAKISQAMGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPA
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
HVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQ
CCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
VLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1479894; 11823852 [H]