| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is pbpC [H]
Identifier: 21241902
GI number: 21241902
Start: 1307645
End: 1310035
Strand: Direct
Name: pbpC [H]
Synonym: XAC1148
Alternate gene names: 21241902
Gene position: 1307645-1310035 (Clockwise)
Preceding gene: 21241901
Following gene: 21241905
Centisome position: 25.27
GC content: 67.04
Gene sequence:
>2391_bases ATGGATCGGACGCAGTCGCGCCCGCAAACGCCGAACCATCAGGCCCGCAACGGACGCCGCTGGCTGCGGTGGCTGCGCTT GGGTGCGGCTGCCTTGCTGAGCGTCATGCTGCTGCTCGATCTGGCCTTCCCGTTGCCGTTGCCCAAGTCCCGCGACACCT CCGCCTTGGTGGTTGCGCGCGACGGCACGCCCTTACGTGCATTCGCCGACCGCAATGGCGTATGGCGCTACCCCGCCACG CTGCAGAGCGTGTCGCCGTTGTATTTGCAGGCACTGCTGAACTACGAAGATCGCTGGTTCTGGCGTCACCCCGGCGTCAA TCCCTGGGGTCTGCTGCGTGCCGGTGGGCAGTGGATCGGGCAGGGCCACATCGTGTCCGGCGGCTCCACGCTGACCATGC AGGTGGCGCGCATCCTGGACCCGCATACGCGTACGCCGTGGGGCAAGGCCAAGCAGTTGTTGCGCGCATTGCAGCTGGAA GCGCACCTGAGCAAGCACGAGATTCTCATGCTGTATCTCGAGCGCGCGCCCTACGGCGGTACCATCGAAGGGGTGGAGGC GGCCAGCTGGGCGTATCTGGGCAAGCCGGCCAAGGCCTTGTCGCACGCCGAGGCCGCGTTGCTGGCGGTATTGCCGCAAT CGCCCAGCCGCCTGCGCCCGGACCGGCACCCGGAAGCGGCGCAGCGCGCACGCGACAAGGTGCTCGACCGCATGGTCGAG CTGGGCGTGTGGTCGCGCGCGCAGGTGGACGATGCGCGCATCGAACCGGTGGTCACACGCTCGCTCAAGCCACCGTTGCA TGCGGCCTTGCTGGCACAGCGCCTGCACGGTGCGCAGCCGCGTGCGGCGCGTATCGTCACCACGCTGGATGTGGAATTGC AGCGCACGCTGGAAGAGCGCGTGGCCACGTATTTTTCGCAGTTGCCCGAGCGCACCTCCGCGGCATTGTTGGTGGTGGAC AACGCCACGATGGAGGCCCGCGCCTACGTGGGCTCGGCCAGTTTCGGCGACCGCAAGCGCCTGGGTCATGTCGACATGGT GCAGGCATGGCGCTCGCCCGGCTCCACGCTCAAGCCGTTCCTGTATGGCATGGCGCTGGACGATGGCCTGATCCATTCCG AGAGCCTGTTGGTGGATGCGCCGCAGAGTTTCGGCGACTACCGGCCCGGCAACTTCGATGCGGCGTTCAATGGTCCGGTG AGCGCGGCCACGGCGTTGCGGCTGTCGTTGAACGTGCCGGCGGTGGATCTGCTCGAGCGCATCGGCCCGGCACGCTTCGC TGCGCGGTTGTCCAATGCCGGGATCGCGCTGCATTTTCCTTCCGGCAGCACGCCATCGCTGGCGTTGATACTGGGCGGCA CCGGCGCACAGTTGCAGGAGTTGGTGGGCGCGTTCGCCGCGCTCAATCGCGGCGGTATTGCCGGACGTGTGCGCTACACG CCAGACGATGCGCGCATCGATCGCCGCTTGATGTCGCCGGGTGCGGCCTGGATCGTGCGCGAAATTTTGCAAAGTAATCC GCGCCCCGGATACGGCAGCGGTACCTTCGACACCACTGCACGCCCCGGCGTGGCGTGGAAGACCGGCACAAGTTATGGCT ACCGCGATGCATGGGCCATTGGCGGGACGCGGCGTTATACCGTCGGCGTCTGGGTAGGACGGCCGGATGGCACGCCGTTG CCGGGCCAATACGGTGCGGTCACCGCATTGCCGTTGATGTTCGAAGTCATCGATGCCTTGCCGCGCAGCGCCGGCGACAG CGCCCCGTTGCCGATGCCCGCCACCGTGCAGGCAATCAACATCTGCTGGCCGCTGGGCGGCGCTGCCGATCAAACGCCAC CGGCTCTGTGCGCACGTCGTGCCGATGCGTATGCACTCGACGGTGCTGTGCCCCCCACCTTTGCCGAACGCGATGCGCGT CTTTGGCAAAGCGGGCAAGTGCGCTTGGAGGTCGATGCGCGCAGCGGTCAGCGGTTGTCGCAGGAATGCAGCCAACCGCA TGAGCGTGTGCCGCGCGCGGTCGCGCGCTGGCCGGCGTTGGTCTCGCCCTGGCTCAATACATCCGAACGCGCCGCCGCGC AACTTCCGCCCTTGGCTGAAGATTGTGCGCCGGACGGGCGCATGACCGGTGGCGGGATGCTACGCATCGATGGGTTGAGC GACCGCGCCACGCTTGCGCGGGCCAACGACGCCGCACGCCCGGTGCGGTTGCAGTTACGTGCGTTGGGCAGCGAGGCGCG CATCGATTGGCTGCTGGATGGCCGCTGGATTGCACAGACCAACGGAAGACAAGGATTTCAGCGCGATTTCGAAGAGGTTG GGTTGCACACGCTCACCGCACTGGCCAGCGATGGCGCATGGACGCAGGTGCGCTTCCGGGTGTTGCGTTGA
Upstream 100 bases:
>100_bases GCTGCAGATACGCTGGCCTGGAATCGCGCAGCGGTAGCCGAAACGCGTTTTGCCCTGCATGCTTTGCGCGATGGATGAAC AGCCGCAGGCACCAACAGGG
Downstream 100 bases:
>100_bases TCGGGTCGCCAACGAAGTGCTACCGCCCCGTGCTCAGCGGCAGACACCTGCTGCTTGCGACAACCCCTGTAGGAGCGCAC TGGGCGCGAGGAGGCGTTAC
Product: bifunctional penicillin-binding protein 1C
Products: NA
Alternate protein names: PBP-1c; PBP1c; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Transpeptidase-like module [H]
Number of amino acids: Translated: 796; Mature: 796
Protein sequence:
>796_residues MDRTQSRPQTPNHQARNGRRWLRWLRLGAAALLSVMLLLDLAFPLPLPKSRDTSALVVARDGTPLRAFADRNGVWRYPAT LQSVSPLYLQALLNYEDRWFWRHPGVNPWGLLRAGGQWIGQGHIVSGGSTLTMQVARILDPHTRTPWGKAKQLLRALQLE AHLSKHEILMLYLERAPYGGTIEGVEAASWAYLGKPAKALSHAEAALLAVLPQSPSRLRPDRHPEAAQRARDKVLDRMVE LGVWSRAQVDDARIEPVVTRSLKPPLHAALLAQRLHGAQPRAARIVTTLDVELQRTLEERVATYFSQLPERTSAALLVVD NATMEARAYVGSASFGDRKRLGHVDMVQAWRSPGSTLKPFLYGMALDDGLIHSESLLVDAPQSFGDYRPGNFDAAFNGPV SAATALRLSLNVPAVDLLERIGPARFAARLSNAGIALHFPSGSTPSLALILGGTGAQLQELVGAFAALNRGGIAGRVRYT PDDARIDRRLMSPGAAWIVREILQSNPRPGYGSGTFDTTARPGVAWKTGTSYGYRDAWAIGGTRRYTVGVWVGRPDGTPL PGQYGAVTALPLMFEVIDALPRSAGDSAPLPMPATVQAINICWPLGGAADQTPPALCARRADAYALDGAVPPTFAERDAR LWQSGQVRLEVDARSGQRLSQECSQPHERVPRAVARWPALVSPWLNTSERAAAQLPPLAEDCAPDGRMTGGGMLRIDGLS DRATLARANDAARPVRLQLRALGSEARIDWLLDGRWIAQTNGRQGFQRDFEEVGLHTLTALASDGAWTQVRFRVLR
Sequences:
>Translated_796_residues MDRTQSRPQTPNHQARNGRRWLRWLRLGAAALLSVMLLLDLAFPLPLPKSRDTSALVVARDGTPLRAFADRNGVWRYPAT LQSVSPLYLQALLNYEDRWFWRHPGVNPWGLLRAGGQWIGQGHIVSGGSTLTMQVARILDPHTRTPWGKAKQLLRALQLE AHLSKHEILMLYLERAPYGGTIEGVEAASWAYLGKPAKALSHAEAALLAVLPQSPSRLRPDRHPEAAQRARDKVLDRMVE LGVWSRAQVDDARIEPVVTRSLKPPLHAALLAQRLHGAQPRAARIVTTLDVELQRTLEERVATYFSQLPERTSAALLVVD NATMEARAYVGSASFGDRKRLGHVDMVQAWRSPGSTLKPFLYGMALDDGLIHSESLLVDAPQSFGDYRPGNFDAAFNGPV SAATALRLSLNVPAVDLLERIGPARFAARLSNAGIALHFPSGSTPSLALILGGTGAQLQELVGAFAALNRGGIAGRVRYT PDDARIDRRLMSPGAAWIVREILQSNPRPGYGSGTFDTTARPGVAWKTGTSYGYRDAWAIGGTRRYTVGVWVGRPDGTPL PGQYGAVTALPLMFEVIDALPRSAGDSAPLPMPATVQAINICWPLGGAADQTPPALCARRADAYALDGAVPPTFAERDAR LWQSGQVRLEVDARSGQRLSQECSQPHERVPRAVARWPALVSPWLNTSERAAAQLPPLAEDCAPDGRMTGGGMLRIDGLS DRATLARANDAARPVRLQLRALGSEARIDWLLDGRWIAQTNGRQGFQRDFEEVGLHTLTALASDGAWTQVRFRVLR >Mature_796_residues MDRTQSRPQTPNHQARNGRRWLRWLRLGAAALLSVMLLLDLAFPLPLPKSRDTSALVVARDGTPLRAFADRNGVWRYPAT LQSVSPLYLQALLNYEDRWFWRHPGVNPWGLLRAGGQWIGQGHIVSGGSTLTMQVARILDPHTRTPWGKAKQLLRALQLE AHLSKHEILMLYLERAPYGGTIEGVEAASWAYLGKPAKALSHAEAALLAVLPQSPSRLRPDRHPEAAQRARDKVLDRMVE LGVWSRAQVDDARIEPVVTRSLKPPLHAALLAQRLHGAQPRAARIVTTLDVELQRTLEERVATYFSQLPERTSAALLVVD NATMEARAYVGSASFGDRKRLGHVDMVQAWRSPGSTLKPFLYGMALDDGLIHSESLLVDAPQSFGDYRPGNFDAAFNGPV SAATALRLSLNVPAVDLLERIGPARFAARLSNAGIALHFPSGSTPSLALILGGTGAQLQELVGAFAALNRGGIAGRVRYT PDDARIDRRLMSPGAAWIVREILQSNPRPGYGSGTFDTTARPGVAWKTGTSYGYRDAWAIGGTRRYTVGVWVGRPDGTPL PGQYGAVTALPLMFEVIDALPRSAGDSAPLPMPATVQAINICWPLGGAADQTPPALCARRADAYALDGAVPPTFAERDAR LWQSGQVRLEVDARSGQRLSQECSQPHERVPRAVARWPALVSPWLNTSERAAAQLPPLAEDCAPDGRMTGGGMLRIDGLS DRATLARANDAARPVRLQLRALGSEARIDWLLDGRWIAQTNGRQGFQRDFEEVGLHTLTALASDGAWTQVRFRVLR
Specific function: Cell wall formation. The enzyme has a penicillin- insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a transpeptidase C-terminal domain which may not be functional [H]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=774, Percent_Identity=47.4160206718346, Blast_Score=653, Evalue=0.0, Organism=Escherichia coli, GI87082258, Length=283, Percent_Identity=30.3886925795053, Blast_Score=119, Evalue=6e-28, Organism=Escherichia coli, GI1786343, Length=535, Percent_Identity=27.6635514018692, Blast_Score=111, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011815 - InterPro: IPR009647 - InterPro: IPR001460 [H]
Pfam domain/function: PF06832 BiPBP_C; PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 86825; Mature: 86825
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRTQSRPQTPNHQARNGRRWLRWLRLGAAALLSVMLLLDLAFPLPLPKSRDTSALVVAR CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE DGTPLRAFADRNGVWRYPATLQSVSPLYLQALLNYEDRWFWRHPGVNPWGLLRAGGQWIG CCCCEEHHHCCCCEEECCHHHHHCCHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCEEC QGHIVSGGSTLTMQVARILDPHTRTPWGKAKQLLRALQLEAHLSKHEILMLYLERAPYGG CCEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC TIEGVEAASWAYLGKPAKALSHAEAALLAVLPQSPSRLRPDRHPEAAQRARDKVLDRMVE CCCCCCHHHHHHCCCHHHHHHHHHHEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHH LGVWSRAQVDDARIEPVVTRSLKPPLHAALLAQRLHGAQPRAARIVTTLDVELQRTLEER HCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHH VATYFSQLPERTSAALLVVDNATMEARAYVGSASFGDRKRLGHVDMVQAWRSPGSTLKPF HHHHHHHCCCCCCEEEEEEECCCEEHHEEECCCCCCCHHHCCCHHHHHHHCCCCCCHHHH LYGMALDDGLIHSESLLVDAPQSFGDYRPGNFDAAFNGPVSAATALRLSLNVPAVDLLER HHHEECCCCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHEEEEEEEECCCHHHHHHH IGPARFAARLSNAGIALHFPSGSTPSLALILGGTGAQLQELVGAFAALNRGGIAGRVRYT HCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEC PDDARIDRRLMSPGAAWIVREILQSNPRPGYGSGTFDTTARPGVAWKTGTSYGYRDAWAI CCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEC GGTRRYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVIDALPRSAGDSAPLPMPATVQAIN CCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEE ICWPLGGAADQTPPALCARRADAYALDGAVPPTFAERDARLWQSGQVRLEVDARSGQRLS EEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHH QECSQPHERVPRAVARWPALVSPWLNTSERAAAQLPPLAEDCAPDGRMTGGGMLRIDGLS HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCC DRATLARANDAARPVRLQLRALGSEARIDWLLDGRWIAQTNGRQGFQRDFEEVGLHTLTA CCHHHHHCCCCCCCCEEHEECCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHCHHHHHH LASDGAWTQVRFRVLR HHCCCCEEEEEEEECC >Mature Secondary Structure MDRTQSRPQTPNHQARNGRRWLRWLRLGAAALLSVMLLLDLAFPLPLPKSRDTSALVVAR CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE DGTPLRAFADRNGVWRYPATLQSVSPLYLQALLNYEDRWFWRHPGVNPWGLLRAGGQWIG CCCCEEHHHCCCCEEECCHHHHHCCHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCEEC QGHIVSGGSTLTMQVARILDPHTRTPWGKAKQLLRALQLEAHLSKHEILMLYLERAPYGG CCEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC TIEGVEAASWAYLGKPAKALSHAEAALLAVLPQSPSRLRPDRHPEAAQRARDKVLDRMVE CCCCCCHHHHHHCCCHHHHHHHHHHEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHH LGVWSRAQVDDARIEPVVTRSLKPPLHAALLAQRLHGAQPRAARIVTTLDVELQRTLEER HCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHH VATYFSQLPERTSAALLVVDNATMEARAYVGSASFGDRKRLGHVDMVQAWRSPGSTLKPF HHHHHHHCCCCCCEEEEEEECCCEEHHEEECCCCCCCHHHCCCHHHHHHHCCCCCCHHHH LYGMALDDGLIHSESLLVDAPQSFGDYRPGNFDAAFNGPVSAATALRLSLNVPAVDLLER HHHEECCCCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHEEEEEEEECCCHHHHHHH IGPARFAARLSNAGIALHFPSGSTPSLALILGGTGAQLQELVGAFAALNRGGIAGRVRYT HCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEC PDDARIDRRLMSPGAAWIVREILQSNPRPGYGSGTFDTTARPGVAWKTGTSYGYRDAWAI CCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEC GGTRRYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVIDALPRSAGDSAPLPMPATVQAIN CCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEE ICWPLGGAADQTPPALCARRADAYALDGAVPPTFAERDARLWQSGQVRLEVDARSGQRLS EEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHH QECSQPHERVPRAVARWPALVSPWLNTSERAAAQLPPLAEDCAPDGRMTGGGMLRIDGLS HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCC DRATLARANDAARPVRLQLRALGSEARIDWLLDGRWIAQTNGRQGFQRDFEEVGLHTLTA CCHHHHHCCCCCCCCEEHEECCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHCHHHHHH LASDGAWTQVRFRVLR HHCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10542235; 9205837; 9278503; 9841666 [H]