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The map label for this gene is ychF [H]

Identifier: 21241722

GI number: 21241722

Start: 1114473

End: 1115564

Strand: Direct

Name: ychF [H]

Synonym: XAC0953

Alternate gene names: 21241722

Gene position: 1114473-1115564 (Clockwise)

Preceding gene: 21241721

Following gene: 21241723

Centisome position: 21.53

GC content: 63.1

Gene sequence:

>1092_bases
ATGGGTATCAAATGCGGCATCGTCGGCCTGCCCAATGTCGGCAAGTCGACCCTGTTCAATGCGCTGACCAAGGCCGGCAT
CGCTGCGGCCAACTTCCCGTTCTGCACCATCGAGCCGAACGTCGGCATCGTGCCGGTGCCGGATCCGCGTCTCAATCAGC
TGGCTGACATCGTCAAGCCGCAGAAGCTGATTCCTACCGCGGTCGAGTTCGTCGATATCGCCGGCCTGGTGGCCGGCGCG
GCGAGCGGCGAAGGCCTGGGCAACAAGTTCCTGGCGCACATCCGCGAAGTCGATGCGATCACCCACGTGGTGCGTTGCTT
CGAGAACGACGACGTCATCCACGTCAACAACAAGGTCGACCCGATCGCCGATATCGAAACCATCGATACCGAGCTGGCGC
TGGCCGATCTGGATAGCGTGGAAAAGGCCCTCAACCGTGCCGAACGCAGCGCCAAGGGGGGCGACAAGGATGCAGCGGCG
CGCAAGCCGGTGCTGGCCAAACTGCAGGCCGCGTTAGCGGATGGCAAGGCGGGTCGTGCCGCCGGTCTGGACGAGGAAGA
AAAGGCGCTGGTGCGCGATCTGTTCCTGCTGACGCTCAAGCCGGTGCTTTACATCGCCAACGTGCTGGAAGACGGCTTCG
AGAACAATCCGCACCTGGATGCGGTGCGCGCGCATGCGGCTGCCGAAGGTGCCGAAGTGGTGCCGGTCTCGGCGGCCATC
GAAGAAGAGCTGTCGCAGCTGGACGATACCGATCGCGACAGCTTCCTGGCCGATCTCGGCCTGGAAGAGCCGGGCTTGAA
TCGCGTCATCCGTGCGGCCTACACGCTGTTGGGCCTGCAGACGTATTTCACTGCAGGGGTCAAGGAAGTGCGCGCCTGGA
CGGTCAAGGCCGGTTCGACGGCGCCGCAGGCTGCTGCCGTGATCCATACCGATTTCGAAAAGGGCTTCATCCGCGCCGAA
ACGATTGGTTTCGACGACTTCATCAAATACCGCGGCGAAACCGGTGCCCGCGATGCCGGGCGCCTGCGCCTGGAAGGCAA
GGAATACCGTGTCCAGGAAGGCGATGTGCTGCACTTCCGCTTCAACGTGTGA

Upstream 100 bases:

>100_bases
GCCTGCACACCGAAAAAAAATAGAGAATGGGGAATAGGGAATGGACAGGGCGCTGCTCCTGCCATTCTCCATTCCCGATT
CTCCATTCACTGGAAAACCC

Downstream 100 bases:

>100_bases
TCGGCTGTGCGTGGCGCCTGGCGCCGCGTGTCGTTGAGAGTGAAGGATTGCTCAAAATTTTTGTTGACACTGCATGCGTC
CCACAACAAAATAACGGGCT

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MGIKCGIVGLPNVGKSTLFNALTKAGIAAANFPFCTIEPNVGIVPVPDPRLNQLADIVKPQKLIPTAVEFVDIAGLVAGA
ASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKVDPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAA
RKPVLAKLQAALADGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFENNPHLDAVRAHAAAEGAEVVPVSAAI
EEELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVRAWTVKAGSTAPQAAAVIHTDFEKGFIRAE
TIGFDDFIKYRGETGARDAGRLRLEGKEYRVQEGDVLHFRFNV

Sequences:

>Translated_363_residues
MGIKCGIVGLPNVGKSTLFNALTKAGIAAANFPFCTIEPNVGIVPVPDPRLNQLADIVKPQKLIPTAVEFVDIAGLVAGA
ASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKVDPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAA
RKPVLAKLQAALADGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFENNPHLDAVRAHAAAEGAEVVPVSAAI
EEELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVRAWTVKAGSTAPQAAAVIHTDFEKGFIRAE
TIGFDDFIKYRGETGARDAGRLRLEGKEYRVQEGDVLHFRFNV
>Mature_362_residues
GIKCGIVGLPNVGKSTLFNALTKAGIAAANFPFCTIEPNVGIVPVPDPRLNQLADIVKPQKLIPTAVEFVDIAGLVAGAA
SGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKVDPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR
KPVLAKLQAALADGKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFENNPHLDAVRAHAAAEGAEVVPVSAAIE
EELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVRAWTVKAGSTAPQAAAVIHTDFEKGFIRAET
IGFDDFIKYRGETGARDAGRLRLEGKEYRVQEGDVLHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=43.0894308943089, Blast_Score=296, Evalue=2e-80,
Organism=Homo sapiens, GI58761502, Length=234, Percent_Identity=35.042735042735, Blast_Score=142, Evalue=6e-34,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=68.870523415978, Blast_Score=522, Evalue=1e-149,
Organism=Escherichia coli, GI1789574, Length=128, Percent_Identity=32.03125, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=365, Percent_Identity=40, Blast_Score=282, Evalue=2e-76,
Organism=Saccharomyces cerevisiae, GI6319499, Length=369, Percent_Identity=38.4823848238482, Blast_Score=260, Evalue=3e-70,
Organism=Saccharomyces cerevisiae, GI6321773, Length=382, Percent_Identity=33.7696335078534, Blast_Score=188, Evalue=1e-48,
Organism=Saccharomyces cerevisiae, GI6321649, Length=352, Percent_Identity=30.3977272727273, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24640873, Length=366, Percent_Identity=42.0765027322404, Blast_Score=291, Evalue=4e-79,
Organism=Drosophila melanogaster, GI24640877, Length=366, Percent_Identity=42.0765027322404, Blast_Score=291, Evalue=4e-79,
Organism=Drosophila melanogaster, GI24640875, Length=366, Percent_Identity=42.0765027322404, Blast_Score=291, Evalue=4e-79,
Organism=Drosophila melanogaster, GI24640879, Length=325, Percent_Identity=39.6923076923077, Blast_Score=235, Evalue=3e-62,
Organism=Drosophila melanogaster, GI24585318, Length=171, Percent_Identity=29.2397660818713, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 38925; Mature: 38793

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKCGIVGLPNVGKSTLFNALTKAGIAAANFPFCTIEPNVGIVPVPDPRLNQLADIVKP
CCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHCC
QKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKVD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
PIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAARKPVLAKLQAALADGKAGRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCCCC
AGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFENNPHLDAVRAHAAAEGAEVVPVSAAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHH
EEELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVRAWTVKAGST
HHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
APQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAGRLRLEGKEYRVQEGDVLHFR
CCCCEEEEEECHHHCCEEEECCCHHHHHHHCCCCCCCCCCEEEECCCCEEECCCCEEEEE
FNV
ECC
>Mature Secondary Structure 
GIKCGIVGLPNVGKSTLFNALTKAGIAAANFPFCTIEPNVGIVPVPDPRLNQLADIVKP
CEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHCC
QKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKVD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
PIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAARKPVLAKLQAALADGKAGRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCCCC
AGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFENNPHLDAVRAHAAAEGAEVVPVSAAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHH
EEELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVRAWTVKAGST
HHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
APQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAGRLRLEGKEYRVQEGDVLHFR
CCCCEEEEEECHHHCCEEEECCCHHHHHHHCCCCCCCCCCEEEECCCCEEECCCCEEEEE
FNV
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]