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The map label for this gene is pcaQ [H]

Identifier: 21241650

GI number: 21241650

Start: 1041053

End: 1042048

Strand: Direct

Name: pcaQ [H]

Synonym: XAC0880

Alternate gene names: 21241650

Gene position: 1041053-1042048 (Clockwise)

Preceding gene: 21241649

Following gene: 21241658

Centisome position: 20.11

GC content: 65.66

Gene sequence:

>996_bases
ATGTCTTCCGTGTTCTTTGAACATCGCATCAAGGTGCGGCACCTGCGTGTCATCGAAGCGCTGGACCGACAGAAAAGCCT
GTTGCGCGCCTCACGCGTCCTGAATGTCACCCAGCCCGCGCTCACGCGCGCCTTGCAGGAGATCGAAGAGATCGTCGGTG
CGCCGCTGTTCGAGCGGCATTCGCGCGGCGTGCGCCCCAACGCGATGGGCGAGGTGCTGGTGCAGACTGCGCATGTGGTG
CTGGGGCAGCTGCGACGTGCGCAGGACACCTTCGAAGGTCTTCTGCAGGACGATGCGCTCACGATCACCGTGGGCGCCTT
GCCGGTGGCGGCCAGCGGTTTGCTGCCGGCGGTGCTGGCCGCGTTGTATCGCACCGAACCCACGCTGCGGGTGCGCCTGC
TGCACGGCCGCACCGATGAGCTGTTGCCCAAGCTGGCCGGTAACGAGATCGATCTGGTGGTCGGGCGGTTGTATCCGCTG
GCCCGCTACGACGCATTGATTCGCAAGGTGTTGTACCAGGACCCGATTGCGCTGGTGGCGCGCAGCGACCACCCGCTGTT
CGCGAATGGGCCGGTGCGCATTGCCGAGGCGGTGGCCTACCGGCAGGTGCTGCCGACCTTGAGCCAGCATGTCGAACGCG
ACGTGGCGCAGGTCATGCGCGAACACGGACTTGCAACGCGCGACCAGTTGCGTTCCAGCTCGGCCAGCTTCACGCGCGAA
ATCCTGCTCGGTACCGACAGCATTGCGGTGATGCCGAGCATGATGGTAGCCGGCGACATCGCACGCGGCGAGTTGCGTGC
CTTCCAGTTGCAGCAACCCTCGCAGGCGCGCGCAGGCGGAGTGATCTATCGCGATGGGAGCGCAATGCACAAGCCCGGCG
TGCGCTTGCTGATGCGCGAGCTGGAGCACCAGCTCGCCCTCATGGCCGAACAAGGCGCGGTGTGGGTGGACGACCGCGTT
GGCGAAGACGATGTGTTGCTGGATGCGTCTGCGTGA

Upstream 100 bases:

>100_bases
GACGCGGCGTGTGCCCCATGCGCGCTGAGCTATGCGTACTGGCTGTGCGCCGCATCGCCGCATCACCCGACTTCCCAACG
TAAGGCCCACCCCCATGACC

Downstream 100 bases:

>100_bases
TCGCGTAAGGCCGGCGCAACGCACGGCGCTTCGCGATTCCTGCCGAGCTGCCTCAACGCTCAACGGATGTCGAGCGCGGC
TGCAGACAGTGGATCGTGCG

Product: transcriptional regulator

Products: NA

Alternate protein names: Pca operon transcriptional activator [H]

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSSVFFEHRIKVRHLRVIEALDRQKSLLRASRVLNVTQPALTRALQEIEEIVGAPLFERHSRGVRPNAMGEVLVQTAHVV
LGQLRRAQDTFEGLLQDDALTITVGALPVAASGLLPAVLAALYRTEPTLRVRLLHGRTDELLPKLAGNEIDLVVGRLYPL
ARYDALIRKVLYQDPIALVARSDHPLFANGPVRIAEAVAYRQVLPTLSQHVERDVAQVMREHGLATRDQLRSSSASFTRE
ILLGTDSIAVMPSMMVAGDIARGELRAFQLQQPSQARAGGVIYRDGSAMHKPGVRLLMRELEHQLALMAEQGAVWVDDRV
GEDDVLLDASA

Sequences:

>Translated_331_residues
MSSVFFEHRIKVRHLRVIEALDRQKSLLRASRVLNVTQPALTRALQEIEEIVGAPLFERHSRGVRPNAMGEVLVQTAHVV
LGQLRRAQDTFEGLLQDDALTITVGALPVAASGLLPAVLAALYRTEPTLRVRLLHGRTDELLPKLAGNEIDLVVGRLYPL
ARYDALIRKVLYQDPIALVARSDHPLFANGPVRIAEAVAYRQVLPTLSQHVERDVAQVMREHGLATRDQLRSSSASFTRE
ILLGTDSIAVMPSMMVAGDIARGELRAFQLQQPSQARAGGVIYRDGSAMHKPGVRLLMRELEHQLALMAEQGAVWVDDRV
GEDDVLLDASA
>Mature_330_residues
SSVFFEHRIKVRHLRVIEALDRQKSLLRASRVLNVTQPALTRALQEIEEIVGAPLFERHSRGVRPNAMGEVLVQTAHVVL
GQLRRAQDTFEGLLQDDALTITVGALPVAASGLLPAVLAALYRTEPTLRVRLLHGRTDELLPKLAGNEIDLVVGRLYPLA
RYDALIRKVLYQDPIALVARSDHPLFANGPVRIAEAVAYRQVLPTLSQHVERDVAQVMREHGLATRDQLRSSSASFTREI
LLGTDSIAVMPSMMVAGDIARGELRAFQLQQPSQARAGGVIYRDGSAMHKPGVRLLMRELEHQLALMAEQGAVWVDDRVG
EDDVLLDASA

Specific function: Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=305, Percent_Identity=27.5409836065574, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787601, Length=247, Percent_Identity=25.9109311740891, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1788887, Length=178, Percent_Identity=30.8988764044944, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI145693105, Length=186, Percent_Identity=26.8817204301075, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789506, Length=247, Percent_Identity=18.6234817813765, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=275, Percent_Identity=23.2727272727273, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081766, Length=184, Percent_Identity=27.1739130434783, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR012787
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36532; Mature: 36401

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVFFEHRIKVRHLRVIEALDRQKSLLRASRVLNVTQPALTRALQEIEEIVGAPLFERH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHH
SRGVRPNAMGEVLVQTAHVVLGQLRRAQDTFEGLLQDDALTITVGALPVAASGLLPAVLA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
ALYRTEPTLRVRLLHGRTDELLPKLAGNEIDLVVGRLYPLARYDALIRKVLYQDPIALVA
HHHCCCCCEEEEEECCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHEEE
RSDHPLFANGPVRIAEAVAYRQVLPTLSQHVERDVAQVMREHGLATRDQLRSSSASFTRE
CCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHH
ILLGTDSIAVMPSMMVAGDIARGELRAFQLQQPSQARAGGVIYRDGSAMHKPGVRLLMRE
HHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHCCCEEEECCCCCCCCHHHHHHHH
LEHQLALMAEQGAVWVDDRVGEDDVLLDASA
HHHHHHHHHHCCCEEECCCCCCCCEEEECCC
>Mature Secondary Structure 
SSVFFEHRIKVRHLRVIEALDRQKSLLRASRVLNVTQPALTRALQEIEEIVGAPLFERH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHH
SRGVRPNAMGEVLVQTAHVVLGQLRRAQDTFEGLLQDDALTITVGALPVAASGLLPAVLA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
ALYRTEPTLRVRLLHGRTDELLPKLAGNEIDLVVGRLYPLARYDALIRKVLYQDPIALVA
HHHCCCCCEEEEEECCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHEEE
RSDHPLFANGPVRIAEAVAYRQVLPTLSQHVERDVAQVMREHGLATRDQLRSSSASFTRE
CCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHH
ILLGTDSIAVMPSMMVAGDIARGELRAFQLQQPSQARAGGVIYRDGSAMHKPGVRLLMRE
HHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHCCCEEEECCCCCCCCHHHHHHHH
LEHQLALMAEQGAVWVDDRVGEDDVLLDASA
HHHHHHHHHHCCCEEECCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]