BacMap

Definition	Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome.
Accession	NC_003919
Length	5,175,554

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The map label for this gene is ptr1 [H]

Identifier: 21241458

GI number: 21241458

Start: 813305

End: 814042

Strand: Reverse

Name: ptr1 [H]

Synonym: XAC0688

Alternate gene names: 21241458

Gene position: 814042-813305 (Counterclockwise)

Preceding gene: 21241461

Following gene: 21241452

Centisome position: 15.73

GC content: 68.7

Gene sequence:

>738_bases
ATGACAGACAGTTCCAAGGTGGTGTTGATCACCGGTGCAGCCCGCCGCATCGGCGCGCAGATCGCCACCACGCTGCACGC
TGCCGGCTACTGCGTTGCGCTGCATGCACACCGCTCCGCCGAGGTGCTGGACGCACGCGTGGCCGAACTGTGCGCGCAGC
GTGCCGGCAGCGCGCACGCCTTGCACGCCGATCTGCGGCTGCCCGATGCACCTGCGCAATTGGTGGCCGGCTGCCTTGCC
GCCTTCGGTCGTCTGGATGGCGTGGTCAACAACGCCTCGGCGTTCTACCCCACCGCCATCGGTGAGGCCACTGCGGCGCA
GTGGGACGACTTGTTTGCGGTCAATGCACGCGCGCCGTTCTTCATCGCGCAAGCCGCCGCCGCACAGTTGCGCCAGCGGC
GCGGGGCCATCGTCAACCTCACCGATCTGCACGCGCAGCAGCCGATGCGCAACCACCCGCTATACGGCGCCTCCAAGAGC
GCGCTGGAAATGCTGACCCGTTCGCTGGCGCTGGAACTGGCGCCGCACGTGCGTGTCAACGCGGTCGCACCTGGCGCCAT
CCTGTGGCCGGAAGAAGGCAAATCCGCCGACGCCAAGCATGCGCTGCTCGCGCGCACGCCGCTGGCGCGCATCGGCACGC
CGGAGGAAATCGCCGAAGCGGTGCGCTGGTTGCTGGACGACGCCAGCTTCGTCACCGGGCATACCCTGCACGTCGATGGC
GGCCGCCAGCTCAGTTGA

Upstream 100 bases:

>100_bases
GTCCGGATCGGGTGTGGGAAGGTCGGCGTGCATGCGGGCACCGGTTGCGGGGACAATGCACAGGATAGCCGAGCCCTCCG
CAACGCCGAGCGAGTACGCC

Downstream 100 bases:

>100_bases
ACGATGCGTCCGGGGCCTGCGCGCTTTCGCTGCGTGGCAACGATATCCCTGTCATGCACGTGAGCCCGGCTGCCGCCTCG
GCGCGTGCGGCACTGCCAGA

Product: pteridine reductase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTDSSKVVLITGAARRIGAQIATTLHAAGYCVALHAHRSAEVLDARVAELCAQRAGSAHALHADLRLPDAPAQLVAGCLA
AFGRLDGVVNNASAFYPTAIGEATAAQWDDLFAVNARAPFFIAQAAAAQLRQRRGAIVNLTDLHAQQPMRNHPLYGASKS
ALEMLTRSLALELAPHVRVNAVAPGAILWPEEGKSADAKHALLARTPLARIGTPEEIAEAVRWLLDDASFVTGHTLHVDG
GRQLS

Sequences:

>Translated_245_residues
MTDSSKVVLITGAARRIGAQIATTLHAAGYCVALHAHRSAEVLDARVAELCAQRAGSAHALHADLRLPDAPAQLVAGCLA
AFGRLDGVVNNASAFYPTAIGEATAAQWDDLFAVNARAPFFIAQAAAAQLRQRRGAIVNLTDLHAQQPMRNHPLYGASKS
ALEMLTRSLALELAPHVRVNAVAPGAILWPEEGKSADAKHALLARTPLARIGTPEEIAEAVRWLLDDASFVTGHTLHVDG
GRQLS
>Mature_244_residues
TDSSKVVLITGAARRIGAQIATTLHAAGYCVALHAHRSAEVLDARVAELCAQRAGSAHALHADLRLPDAPAQLVAGCLAA
FGRLDGVVNNASAFYPTAIGEATAAQWDDLFAVNARAPFFIAQAAAAQLRQRRGAIVNLTDLHAQQPMRNHPLYGASKSA
LEMLTRSLALELAPHVRVNAVAPGAILWPEEGKSADAKHALLARTPLARIGTPEEIAEAVRWLLDDASFVTGHTLHVDGG
RQLS

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=35.1020408163265, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=32.8063241106719, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=30.7086614173228, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI59889578, Length=192, Percent_Identity=34.375, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=31.8367346938775, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=28.968253968254, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=29.9595141700405, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=28.9156626506024, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4503301, Length=222, Percent_Identity=24.7747747747748, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=32.7956989247312, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=29.4605809128631, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=172, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=34.0080971659919, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787335, Length=253, Percent_Identity=30.8300395256917, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=33.0645161290323, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=32.5490196078431, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=30.7086614173228, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786812, Length=270, Percent_Identity=32.962962962963, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=30.2904564315353, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787891, Length=240, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=26.4462809917355, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=34.0163934426229, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=28.6821705426357, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787526, Length=245, Percent_Identity=27.7551020408163, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=30.3643724696356, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787545, Length=262, Percent_Identity=29.3893129770992, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=36.734693877551, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=32.4427480916031, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=32.9411764705882, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=31.3253012048193, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=32.1285140562249, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=30.0380228136882, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=31.0606060606061, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=31.0344827586207, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=29.7709923664122, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=30.6818181818182, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=30, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=29.7709923664122, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=29.2134831460674, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=28.8461538461538, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=28.6259541984733, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=29.7297297297297, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=30.0380228136882, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=26.8939393939394, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=30.3370786516854, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=27.7566539923954, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=31.8548387096774, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=27.6, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.3893129770992, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=26, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=28.6290322580645, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=26.4367816091954, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=253, Percent_Identity=29.2490118577075, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=29.4820717131474, Blast_Score=74, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=187, Percent_Identity=29.9465240641711, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=34.6613545816733, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=34.9206349206349, Blast_Score=110, Evalue=6e-25,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=33.6032388663968, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=32.258064516129, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=32.9317269076305, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=33.7349397590361, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=36.9047619047619, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=30.4878048780488, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 25858; Mature: 25727

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSSKVVLITGAARRIGAQIATTLHAAGYCVALHAHRSAEVLDARVAELCAQRAGSAHA
CCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEE
LHADLRLPDAPAQLVAGCLAAFGRLDGVVNNASAFYPTAIGEATAAQWDDLFAVNARAPF
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHCCCCEEEECCCCCH
FIAQAAAAQLRQRRGAIVNLTDLHAQQPMRNHPLYGASKSALEMLTRSLALELAPHVRVN
HHHHHHHHHHHHHCCCEEEEHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
AVAPGAILWPEEGKSADAKHALLARTPLARIGTPEEIAEAVRWLLDDASFVTGHTLHVDG
EECCCEEECCCCCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCHHHCCEEEEECC
GRQLS
CCCCC
>Mature Secondary Structure 
TDSSKVVLITGAARRIGAQIATTLHAAGYCVALHAHRSAEVLDARVAELCAQRAGSAHA
CCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEE
LHADLRLPDAPAQLVAGCLAAFGRLDGVVNNASAFYPTAIGEATAAQWDDLFAVNARAPF
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHCCCCEEEECCCCCH
FIAQAAAAQLRQRRGAIVNLTDLHAQQPMRNHPLYGASKSALEMLTRSLALELAPHVRVN
HHHHHHHHHHHHHCCCEEEEHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
AVAPGAILWPEEGKSADAKHALLARTPLARIGTPEEIAEAVRWLLDDASFVTGHTLHVDG
EECCCEEECCCCCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCHHHCCEEEEECC
GRQLS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA