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The map label for this gene is ycjD [H]

Identifier: 21241226

GI number: 21241226

Start: 542836

End: 543165

Strand: Direct

Name: ycjD [H]

Synonym: XAC0453

Alternate gene names: 21241226

Gene position: 542836-543165 (Clockwise)

Preceding gene: 21241225

Following gene: 21241227

Centisome position: 10.49

GC content: 55.45

Gene sequence:

>330_bases
ATGACCGATGCAGAGCGTGCAGTGTGGCGCTGTTTACGTAGCAAGCAGCTGCACGGTTTGAAGTTCCGGCGCCAGCATCC
GATTCCGCCCTACATCGCAGATTTTTGTTGCATCGAAAGACGCTTGATCATCGAGTTGGACGGATCGCAGCACGATGCTT
CTAGCGATCAGGCAAGGTCGCAGTGGCTTCAATCACAAGGATGGACAGTACTGCGCTTCTGGAACAATGATGTATTGCTT
TCGCTGGATGCGGTGGTTGAGACGATCTGCAAGATGGTCGCTACGCCGTACCCTCACCCCAACCCCTCTCCCGGTGGGAG
AGGGGCTTGA

Upstream 100 bases:

>100_bases
ACGGGAGAGGGGTTGGGGTGAGGGTACGGTGGAGCGATGAAAATCAAACCGCCGTTACCCACTGCCACACGCACCCCATG
CACGCGCATTACGTACAACG

Downstream 100 bases:

>100_bases
TTCGCCAGGCTTCAGCTCTTTTTCGGTAAGAGCGGCTTGATCCAACGCGATCCCAACCTTCTGCTGTCATGGAGGGCGGA
TCAACATCCGGACGCACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MTDAERAVWRCLRSKQLHGLKFRRQHPIPPYIADFCCIERRLIIELDGSQHDASSDQARSQWLQSQGWTVLRFWNNDVLL
SLDAVVETICKMVATPYPHPNPSPGGRGA

Sequences:

>Translated_109_residues
MTDAERAVWRCLRSKQLHGLKFRRQHPIPPYIADFCCIERRLIIELDGSQHDASSDQARSQWLQSQGWTVLRFWNNDVLL
SLDAVVETICKMVATPYPHPNPSPGGRGA
>Mature_108_residues
TDAERAVWRCLRSKQLHGLKFRRQHPIPPYIADFCCIERRLIIELDGSQHDASSDQARSQWLQSQGWTVLRFWNNDVLLS
LDAVVETICKMVATPYPHPNPSPGGRGA

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=102, Percent_Identity=48.0392156862745, Blast_Score=108, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 12456; Mature: 12325

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAERAVWRCLRSKQLHGLKFRRQHPIPPYIADFCCIERRLIIELDGSQHDASSDQARS
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCHHHHH
QWLQSQGWTVLRFWNNDVLLSLDAVVETICKMVATPYPHPNPSPGGRGA
HHHHHCCCEEEEEECCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDAERAVWRCLRSKQLHGLKFRRQHPIPPYIADFCCIERRLIIELDGSQHDASSDQARS
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCHHHHH
QWLQSQGWTVLRFWNNDVLLSLDAVVETICKMVATPYPHPNPSPGGRGA
HHHHHCCCEEEEEECCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]