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The map label for this gene is pobR [C]

Identifier: 21241129

GI number: 21241129

Start: 423572

End: 424459

Strand: Reverse

Name: pobR [C]

Synonym: XAC0355

Alternate gene names: 21241129

Gene position: 424459-423572 (Counterclockwise)

Preceding gene: 21241132

Following gene: 21241122

Centisome position: 8.2

GC content: 64.75

Gene sequence:

>888_bases
ATGGCCACATCCGTTCCCGACACTGCCGCAGTCCCTGCATTCGGCTTGTATGGCGAGCAACACGCCGACGCTGCTGAATT
GCTGCATTGGGAGTCGATCGCCGCACGCAGCCGGCTGCACGACTGGCAGATCGTCCCGCATCGACACGAGGATTTAGCGC
AGCTGGTCTATGTGCAACGCGGGCCGGCCACGCTGCAGCTGGATGGGCGCACGCAACGCCTGCGCCGCGCCAGCGTGGTG
TGGCTTCCGCCGCTCTGCGTGCATGGCTTTGCCTTCGACCCGGCAGTGCGTGGCCACGTCATCACCCTGTGCATGCCGCT
GGTCAGGACGGCGCTGAACGCTGCGCCGTTACTGCAACAGGTCATGACCGCGCCAGCAGTTGTGCACGCCCAGCATGCGC
GCAAATGGCTGGATGTGTTGTTTGGCAGCATTGCGCAGGACCACGCACGCCGGTCGATCGGCTATGACGTCGCAGCGCAG
GCCGCAGCGGCGCAGCTGGTCATCTGGATGGCGCGTACGGCACTGGAGCGCGCCCGGCATGCCGCAGCAATCAGCCCGCA
CGCGGACCCGGCGCTACGCCATCTGCGCGCTTATCAAGACTTGATCGACCAGCACTATCGCGCCCACTGGCCGATTTCCC
GCTATGCCGATCAACTTGGGGTGACGCCCGGTCATCTCAACGCGTTGTGCCAGCGCCTGGCTGGCGCCTCCGCATTGCAG
CTGCTGCAGCGCAGGATCATGCTGGAAGCACGCCGCACACTGCGTTACACCAGCCTGAGCGTGCAACAGATTGCCGCCAG
CCTTGGATTTTTCGACGCTGCCTATTTCAGTCGCTACTTCGCACGGCACGCCGGTTGCTCGCCGACGCGCTTTCGAGTCG
GTGAATAG

Upstream 100 bases:

>100_bases
GCATGCCCTGCTCCTGGCCTGGATGGCGATGCCTGCAGTGTCGGTAGCCAAAGCGCCGCATTGAAGGGATGATTCCGTGC
AGTCCTTGGACTTTTCGACG

Downstream 100 bases:

>100_bases
AAGCGACCAACAGGACGACTTCACTCAATCGCTGTGCGCGTGGTAGGGGACGATCTGCAGACGTGCTGCAGGGCCCTTGC
GCGCCCGCCATCGCAGGACA

Product: PobR regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; AraC-Family Transcriptional Regulator; AraC-Type Transcription Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Transcriptional Regulator Pobr Arac Family Protein; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; Transcription Regulator; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Domain Protein; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDLAQLVYVQRGPATLQLDGRTQRLRRASVV
WLPPLCVHGFAFDPAVRGHVITLCMPLVRTALNAAPLLQQVMTAPAVVHAQHARKWLDVLFGSIAQDHARRSIGYDVAAQ
AAAAQLVIWMARTALERARHAAAISPHADPALRHLRAYQDLIDQHYRAHWPISRYADQLGVTPGHLNALCQRLAGASALQ
LLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFRVGE

Sequences:

>Translated_295_residues
MATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDLAQLVYVQRGPATLQLDGRTQRLRRASVV
WLPPLCVHGFAFDPAVRGHVITLCMPLVRTALNAAPLLQQVMTAPAVVHAQHARKWLDVLFGSIAQDHARRSIGYDVAAQ
AAAAQLVIWMARTALERARHAAAISPHADPALRHLRAYQDLIDQHYRAHWPISRYADQLGVTPGHLNALCQRLAGASALQ
LLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFRVGE
>Mature_294_residues
ATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDLAQLVYVQRGPATLQLDGRTQRLRRASVVW
LPPLCVHGFAFDPAVRGHVITLCMPLVRTALNAAPLLQQVMTAPAVVHAQHARKWLDVLFGSIAQDHARRSIGYDVAAQA
AAAQLVIWMARTALERARHAAAISPHADPALRHLRAYQDLIDQHYRAHWPISRYADQLGVTPGHLNALCQRLAGASALQL
LQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFRVGE

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32836; Mature: 32705

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDLAQLVYVQR
CCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
GPATLQLDGRTQRLRRASVVWLPPLCVHGFAFDPAVRGHVITLCMPLVRTALNAAPLLQQ
CCCEEEECCHHHHHHHHCEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VMTAPAVVHAQHARKWLDVLFGSIAQDHARRSIGYDVAAQAAAAQLVIWMARTALERARH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAISPHADPALRHLRAYQDLIDQHYRAHWPISRYADQLGVTPGHLNALCQRLAGASALQ
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHH
LLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFRVGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ATSVPDTAAVPAFGLYGEQHADAAELLHWESIAARSRLHDWQIVPHRHEDLAQLVYVQR
CCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
GPATLQLDGRTQRLRRASVVWLPPLCVHGFAFDPAVRGHVITLCMPLVRTALNAAPLLQQ
CCCEEEECCHHHHHHHHCEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VMTAPAVVHAQHARKWLDVLFGSIAQDHARRSIGYDVAAQAAAAQLVIWMARTALERARH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAISPHADPALRHLRAYQDLIDQHYRAHWPISRYADQLGVTPGHLNALCQRLAGASALQ
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHH
LLQRRIMLEARRTLRYTSLSVQQIAASLGFFDAAYFSRYFARHAGCSPTRFRVGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA