Click here to switch to the map view.

The map label for this gene is yrdA [H]

Identifier: 21241122

GI number: 21241122

Start: 415047

End: 415592

Strand: Reverse

Name: yrdA [H]

Synonym: XAC0348

Alternate gene names: 21241122

Gene position: 415592-415047 (Counterclockwise)

Preceding gene: 21241129

Following gene: 21241119

Centisome position: 8.03

GC content: 64.84

Gene sequence:

>546_bases
GTGACACCGATTCGCTCCTTCCTGGACCACACCCCGCAGCTGGGTGCCCGCGTTTACGTCGATCCTGCCTGCACCATCAT
CGGCAAGGTGAGCCTGGGCGATGACGTCTCGATCTGGCCGGGCACCGTGATTCGCGGGGACGTCAATCATGTGCAGATCG
GCGCGCGCACCAACGTGCAGGACGGCACCATCATTCACGTCAGCCACCACAGCCCGTTCAACAAGGCCGGCTACCCCACC
GTGATCGGCGAGGACGTCACCGTCGGCCACGGCACCATCCTGCATGCCTGCACCATCGAAGACCTGTGCCTGATCGGCAT
GGGCGCCTGCGTGCTCGATGGCGCCACCGTCAGGCGCTATGGCTTCGTCGGTGCCGGTGCGGTGGTCGGCCCGGGCAAGG
TGGTCGGCGAAGCCGAGTTGTGGCTGGGCAATCCTGCACGTTTGGCGCGCACGCTCAGCGACAAGGAAATCGAAAGCCTG
CATTACTCCGCGCAACATTACGTGCGGCTCAAGGACCAATACCTGGGCGCCTCACCCGCCAGCTGA

Upstream 100 bases:

>100_bases
GTTGCTTCAGCGCATTGCCGCTGCCGCAGCGGCAACCGCAGCGCAGGTATCATCCGCAGCGTGTCCGCAGTGGGCGGCAC
GCTGACCTGACGGAGATGCC

Downstream 100 bases:

>100_bases
GCCGCAGCACCGGCGCACCTGTCTGGCGCGGGCGCGACGGTACCGGGGTGCGCGCGGCTACGGCCGCGTGGCGTGCTCCA
GTGCCGTCAACGTGGCCAGC

Product: transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTPIRSFLDHTPQLGARVYVDPACTIIGKVSLGDDVSIWPGTVIRGDVNHVQIGARTNVQDGTIIHVSHHSPFNKAGYPT
VIGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVRRYGFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESL
HYSAQHYVRLKDQYLGASPAS

Sequences:

>Translated_181_residues
MTPIRSFLDHTPQLGARVYVDPACTIIGKVSLGDDVSIWPGTVIRGDVNHVQIGARTNVQDGTIIHVSHHSPFNKAGYPT
VIGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVRRYGFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESL
HYSAQHYVRLKDQYLGASPAS
>Mature_180_residues
TPIRSFLDHTPQLGARVYVDPACTIIGKVSLGDDVSIWPGTVIRGDVNHVQIGARTNVQDGTIIHVSHHSPFNKAGYPTV
IGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVRRYGFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESLH
YSAQHYVRLKDQYLGASPAS

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=172, Percent_Identity=51.7441860465116, Blast_Score=184, Evalue=4e-48,
Organism=Escherichia coli, GI1787667, Length=158, Percent_Identity=34.8101265822785, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI87081681, Length=168, Percent_Identity=32.7380952380952, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19222; Mature: 19091

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPIRSFLDHTPQLGARVYVDPACTIIGKVSLGDDVSIWPGTVIRGDVNHVQIGARTNVQ
CCHHHHHHCCCCCCCCEEEECCCEEEEEEEECCCCCEECCCEEEECCCCEEEECCCCCCC
DGTIIHVSHHSPFNKAGYPTVIGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVRRY
CCEEEEEECCCCCCCCCCCEEECCCEEECCCEEEEEECHHHHHHHCCCHHHCCCCEEEEE
GFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESLHYSAQHYVRLKDQYLGASPA
CCCCCCCEECCCCEECCEEEEECCHHHHHHHHCHHHHHHHHHCCHHEEEEEHHHCCCCCC
S
C
>Mature Secondary Structure 
TPIRSFLDHTPQLGARVYVDPACTIIGKVSLGDDVSIWPGTVIRGDVNHVQIGARTNVQ
CHHHHHHCCCCCCCCEEEECCCEEEEEEEECCCCCEECCCEEEECCCCEEEECCCCCCC
DGTIIHVSHHSPFNKAGYPTVIGEDVTVGHGTILHACTIEDLCLIGMGACVLDGATVRRY
CCEEEEEECCCCCCCCCCCEEECCCEEECCCEEEEEECHHHHHHHCCCHHHCCCCEEEEE
GFVGAGAVVGPGKVVGEAELWLGNPARLARTLSDKEIESLHYSAQHYVRLKDQYLGASPA
CCCCCCCEECCCCEECCEEEEECCHHHHHHHHCHHHHHHHHHCCHHEEEEEHHHCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]