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The map label for this gene is opdE [H]

Identifier: 21241077

GI number: 21241077

Start: 360678

End: 361877

Strand: Direct

Name: opdE [H]

Synonym: XAC0303

Alternate gene names: 21241077

Gene position: 360678-361877 (Clockwise)

Preceding gene: 21241076

Following gene: 21241086

Centisome position: 6.97

GC content: 65.25

Gene sequence:

>1200_bases
ATGCAAGCCAGTTCGCTCGCTACCGATTCAACCTCGCGCACCGCACCCGTCGCAACCCGCCAGACCTGGAGCGCGGTCGG
CTCGATGTCGCTCTGCGTTGCGCTGCTGATCGCTTCCGAATTCATGCCGGTCAGCCTGCTCACGCCGATCGCCTCCGATC
TGCACGCCAGTGCCGGCATGGCCGGCCAGGCGATCTCGATCTCCGGCCTGTTCGCTGTGGTCGCCAGCCTGCTGATCGCA
CCGCTGTCGTCGCGCTTCAACCGGCGCCATGTGTTGATCGCGCTGACCGGGATGATGCTGTTGTCGTTGCTGTTGATCGC
CAATGCGCACAGCTTCGGAATGTTGATGGTGGCGCGTGCGCTGCTCGGCATCACCATCGGCGGCTTCTGGGCATTGTCCA
CCGCCACGGTGATGCGCCTCATGCCCGAGCATGCGGTGCCCAAGGCGCTGGGCATCGTGTTTATCGGTAACGCAGTCGCT
GCTGCATTCGCCGCGCCGTTGGGCAGCTATCTGGGCGCCAGCATCGGCTGGCGCGGGGTGTTCTGGGGCATGTTGCCGTT
GGTGGCGCTGACCATCGTCTGGCAATGGCGCAGCCTGCCGTCGATGCTCGCGCAGGGCGCCACCTCGCTGGGCAGCATCG
TCACCTTGTTGAAGCGTCGCTATGTTGCGCGCGCCATGCTCGCGGTAATGCTCGGATTCGCCGGTGCGTTTTCTGCGTTC
ACCTACTTCCGCCCGTTTCTGGAAACCGTTGCGCAGGTCGATGTATCGCAACTGTCGTTGCTGCTGCTCGGCCTGGGCCT
GGCTGGATTCGTCGGTACCTCTGCCGCCACCGCGTTAGTGCCGAAGCGCTTGTTCACCCTGCTCAGCGTGCTGCCGGTCG
CGCTGGGCGTGGTGACCATCAGCATGCTGCTGGCCGGTCACCTGGTGTGGGCCGTGGCAGTGGCGATGATTGCCTGGGGC
ACGCTCAACTCGGCGATGCCGGTGGCTTGGTCCACCTGGTTGAGCCGCTGCGTCAAGGACGCACCGGAAAGCGGCGGCGG
CCTGATGGTTGCCGCAATCCAGCTCTCCATCATGCTGGGCGGGGCCGCAGGCGGCGTGCTGCTGGATCATGTGTCGATCG
GCGCCACCTTTGTCGGTGCCAGCGTATTGCTGCTGGCCTCGTCACTGGTTGCAGGCCGGGGCGATCGTTTGCAGCCGTGA

Upstream 100 bases:

>100_bases
GGCGCATCCCTTCCGGACACCAGGTGTGCTATCGAGCGCGGCGTCAGCGCGCTTGCGGCGTGGCGTTCGTCTCGCATTCC
ACTTCGCACAAAGGCTCCAC

Downstream 100 bases:

>100_bases
GTGATGGCGATCGCACGATGCGGCGCGCATTGCGTGGACGGCGGCACGTGCCACGTAACGCCGCCAGAGGCAGTGCTTGG
CTACCTCTGGCGGCGCACAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MQASSLATDSTSRTAPVATRQTWSAVGSMSLCVALLIASEFMPVSLLTPIASDLHASAGMAGQAISISGLFAVVASLLIA
PLSSRFNRRHVLIALTGMMLLSLLLIANAHSFGMLMVARALLGITIGGFWALSTATVMRLMPEHAVPKALGIVFIGNAVA
AAFAAPLGSYLGASIGWRGVFWGMLPLVALTIVWQWRSLPSMLAQGATSLGSIVTLLKRRYVARAMLAVMLGFAGAFSAF
TYFRPFLETVAQVDVSQLSLLLLGLGLAGFVGTSAATALVPKRLFTLLSVLPVALGVVTISMLLAGHLVWAVAVAMIAWG
TLNSAMPVAWSTWLSRCVKDAPESGGGLMVAAIQLSIMLGGAAGGVLLDHVSIGATFVGASVLLLASSLVAGRGDRLQP

Sequences:

>Translated_399_residues
MQASSLATDSTSRTAPVATRQTWSAVGSMSLCVALLIASEFMPVSLLTPIASDLHASAGMAGQAISISGLFAVVASLLIA
PLSSRFNRRHVLIALTGMMLLSLLLIANAHSFGMLMVARALLGITIGGFWALSTATVMRLMPEHAVPKALGIVFIGNAVA
AAFAAPLGSYLGASIGWRGVFWGMLPLVALTIVWQWRSLPSMLAQGATSLGSIVTLLKRRYVARAMLAVMLGFAGAFSAF
TYFRPFLETVAQVDVSQLSLLLLGLGLAGFVGTSAATALVPKRLFTLLSVLPVALGVVTISMLLAGHLVWAVAVAMIAWG
TLNSAMPVAWSTWLSRCVKDAPESGGGLMVAAIQLSIMLGGAAGGVLLDHVSIGATFVGASVLLLASSLVAGRGDRLQP
>Mature_399_residues
MQASSLATDSTSRTAPVATRQTWSAVGSMSLCVALLIASEFMPVSLLTPIASDLHASAGMAGQAISISGLFAVVASLLIA
PLSSRFNRRHVLIALTGMMLLSLLLIANAHSFGMLMVARALLGITIGGFWALSTATVMRLMPEHAVPKALGIVFIGNAVA
AAFAAPLGSYLGASIGWRGVFWGMLPLVALTIVWQWRSLPSMLAQGATSLGSIVTLLKRRYVARAMLAVMLGFAGAFSAF
TYFRPFLETVAQVDVSQLSLLLLGLGLAGFVGTSAATALVPKRLFTLLSVLPVALGVVTISMLLAGHLVWAVAVAMIAWG
TLNSAMPVAWSTWLSRCVKDAPESGGGLMVAAIQLSIMLGGAAGGVLLDHVSIGATFVGASVLLLASSLVAGRGDRLQP

Specific function: Regulates the expression of oprD which encodes the imipenem-specific porin [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ywfA [H]

Homologues:

Organism=Escherichia coli, GI145693198, Length=382, Percent_Identity=40.0523560209424, Blast_Score=261, Evalue=8e-71,
Organism=Escherichia coli, GI1787947, Length=304, Percent_Identity=25.9868421052632, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787808, Length=238, Percent_Identity=25.2100840336134, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786595, Length=237, Percent_Identity=24.4725738396624, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41243; Mature: 41243

Theoretical pI: Translated: 11.55; Mature: 11.55

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1427017; 10984043 [H]