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The map label for this gene is ycjZ [C]

Identifier: 21241076

GI number: 21241076

Start: 359407

End: 360360

Strand: Direct

Name: ycjZ [C]

Synonym: XAC0302

Alternate gene names: 21241076

Gene position: 359407-360360 (Clockwise)

Preceding gene: 21241064

Following gene: 21241077

Centisome position: 6.94

GC content: 64.68

Gene sequence:

>954_bases
TTGGGATCCCTTTTTCACCGGCTGCTACAGTCATGTGGATTCCATGAAAGAGATTCACCAATGGCGCGCGACAACTTCAA
GGACCTGCTGGCGCTGATCGCCATCGTTCGCGAGGGCAGCTTTACCCGCGCTGCCGCCAAGCTGGGCGTTTCGCAGTCGG
CGCTGAGTCACACCATTCGCGGGCTGGAAGCGACGCTGGGTCTGCGCCTGCTGACCCGTACCACACGCAGCGTGGCGCCC
ACCGAAGCCGGCGAGCGGCTGATCCAGACGGTGGCACCGCGCTTTGCCGAAATTGAAGAGGCGCTGTCTGCGCTCGGCGA
AATGCGCAACACGCCCGCAGGCACCGTGCGCATCACCGCCACCGACTACGCCGCGCGCGCGATCCTGTGGCCCAAGCTGT
CCAGGTTGCTGCGCGACTACCCCGAGATCAAGGTCGAGATCGTGGTCGACAACGGCCTGACCGACATCGTTGCCGACCGC
TACGACCTGGGCGTTCGGCTGGGCGACCAGGTCGAAAAGGACATGATCGCCGCGCGCATCGCACCGGACATGCGCATGGC
CATCGTCGCCGCGCCGTCCTATCTCGAACGTCGGCCCATCCCCAAGACGCCGCAGGACCTCACCGCGCACAGCTGCATCA
ACCTGCGCATGAAAACCGCCGGTGGCATCTACGCCTGGGAGCTGGAAAAGAACGGCCGCGAAGTCATCGTGCGCGTGGAT
GGCCAACTGACCTTCAACGGCATCTACGAAGCGCTGGACGCGGCGGTGGATGGCTTCGGTATCGCGTTCGTGCAGGAGGA
TCTGGCGCGCCCGCATATCAAGGCCGGGCGGCTGCGCTGGGTAATGAAGGACTGGTCGCCGACCTGGCCGGGCTTGCATG
CGTTCTATCCCAGCCGCCGCCATTCCTCGTCCGCCTTCAACCTCGTCGTGGATGCGCTGCGCTACAAGGGTTGA

Upstream 100 bases:

>100_bases
CAGGAGAAGGGCCCCGAAGGGGCGGAGGAGGGGGCGGCAGCATCGAGAATGCTGGCCGGCCGTACCCTCACCCCAACCCC
TCTCCCGCAGAAGAGGGGCT

Downstream 100 bases:

>100_bases
GGGATCCGCGCCAGGCAGAGGCGCTCGACGCAGGCGCATCTTTGATGAGTGGGCCTCATAAGCCCGTGCGGATCGGCCAT
CTTTATCGCTGCCCACGGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MGSLFHRLLQSCGFHERDSPMARDNFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAP
TEAGERLIQTVAPRFAEIEEALSALGEMRNTPAGTVRITATDYAARAILWPKLSRLLRDYPEIKVEIVVDNGLTDIVADR
YDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLERRPIPKTPQDLTAHSCINLRMKTAGGIYAWELEKNGREVIVRVD
GQLTFNGIYEALDAAVDGFGIAFVQEDLARPHIKAGRLRWVMKDWSPTWPGLHAFYPSRRHSSSAFNLVVDALRYKG

Sequences:

>Translated_317_residues
MGSLFHRLLQSCGFHERDSPMARDNFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAP
TEAGERLIQTVAPRFAEIEEALSALGEMRNTPAGTVRITATDYAARAILWPKLSRLLRDYPEIKVEIVVDNGLTDIVADR
YDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLERRPIPKTPQDLTAHSCINLRMKTAGGIYAWELEKNGREVIVRVD
GQLTFNGIYEALDAAVDGFGIAFVQEDLARPHIKAGRLRWVMKDWSPTWPGLHAFYPSRRHSSSAFNLVVDALRYKG
>Mature_316_residues
GSLFHRLLQSCGFHERDSPMARDNFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPT
EAGERLIQTVAPRFAEIEEALSALGEMRNTPAGTVRITATDYAARAILWPKLSRLLRDYPEIKVEIVVDNGLTDIVADRY
DLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLERRPIPKTPQDLTAHSCINLRMKTAGGIYAWELEKNGREVIVRVDG
QLTFNGIYEALDAAVDGFGIAFVQEDLARPHIKAGRLRWVMKDWSPTWPGLHAFYPSRRHSSSAFNLVVDALRYKG

Specific function: May have a role in the regulation of oprD expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=47.8114478114478, Blast_Score=301, Evalue=4e-83,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=37.6712328767123, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=30.2083333333333, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=29.8305084745763, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=28.719723183391, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=27.5862068965517, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=29.3515358361775, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=26.2068965517241, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1789173, Length=259, Percent_Identity=31.6602316602317, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=34.1666666666667, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=25.2559726962457, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788706, Length=244, Percent_Identity=23.7704918032787, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=31.3868613138686, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=142, Percent_Identity=27.4647887323944, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790011, Length=299, Percent_Identity=21.4046822742475, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=129, Percent_Identity=34.8837209302326, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35207; Mature: 35076

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSLFHRLLQSCGFHERDSPMARDNFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIR
CCHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
GLEATLGLRLLTRTTRSVAPTEAGERLIQTVAPRFAEIEEALSALGEMRNTPAGTVRITA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
TDYAARAILWPKLSRLLRDYPEIKVEIVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARI
CHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHC
APDMRMAIVAAPSYLERRPIPKTPQDLTAHSCINLRMKTAGGIYAWELEKNGREVIVRVD
CCCCEEEEEECCHHHHCCCCCCCCHHHHHHHHHEEEEECCCCEEEEEECCCCCEEEEEEC
GQLTFNGIYEALDAAVDGFGIAFVQEDLARPHIKAGRLRWVMKDWSPTWPGLHAFYPSRR
CEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC
HSSSAFNLVVDALRYKG
CCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
GSLFHRLLQSCGFHERDSPMARDNFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIR
CHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
GLEATLGLRLLTRTTRSVAPTEAGERLIQTVAPRFAEIEEALSALGEMRNTPAGTVRITA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
TDYAARAILWPKLSRLLRDYPEIKVEIVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARI
CHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHC
APDMRMAIVAAPSYLERRPIPKTPQDLTAHSCINLRMKTAGGIYAWELEKNGREVIVRVD
CCCCEEEEEECCHHHHCCCCCCCCHHHHHHHHHEEEEECCCCEEEEEECCCCCEEEEEEC
GQLTFNGIYEALDAAVDGFGIAFVQEDLARPHIKAGRLRWVMKDWSPTWPGLHAFYPSRR
CEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCC
HSSSAFNLVVDALRYKG
CCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]