| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yprA [H]
Identifier: 21240852
GI number: 21240852
Start: 96058
End: 98466
Strand: Reverse
Name: yprA [H]
Synonym: XAC0078
Alternate gene names: 21240852
Gene position: 98466-96058 (Counterclockwise)
Preceding gene: 21240856
Following gene: 77748504
Centisome position: 1.9
GC content: 66.79
Gene sequence:
>2409_bases TTGCTCACCGAGCGCCTGGAATGGCGTTACCACGACCGCATCACCGGCAGCTTCACCATTCCCGGGCGCACAGGCCGCTA TGCGCCGATCCCCGGCGATGTGCCCGGCGCGCTGGCCGATGCGCTGCAGGCGCGCGGCATCAGCCAGCTCTACAGCCACC AGGCCGATGCCTGGGCGGCGACCCAGCGCGGCGAGCATGTGGCGATCGTGACGCCCACCGCCTCGGGTAAATCGCTGTGC TACACGCTGCCGGTGGTGAGCGCGGCGATGACCAGCGGCGCCAAGGCCTTGTACCTGTTCCCGACCAAGGCGCTGGCGCA GGACCAGGTGGCCGAGCTGCTGGAGTTGAACCGCGCCGGCGAGCTGGGCGTGAAAGCCTTCACCTTCGATGGCGACACGC CCGGCGATGCGCGCCAGGCGATTCGGCTGCATGGCGACATCGTGGTGAGCAACCCGGACATGCTGCATCAGGCGATCCTG CCGCACCACACCAAGTGGGCGCAGTTCTTCGAGAACCTGCGCTATGTGGTGATCGACGAGATCCACACCTACCGCGGCGT ATTCGGCAGCCATGTCACCAACGTGCTGCGCCGGCTCAAGCGCATCTGCGCGTTCTATGGCGCCACCCCGCAATTCATCC TGTGCTCGGCCACCATCGGCAACCCGCATGCGCACGCGCAGGCCTTGATCGAAGAGCAGGTGCATGGCATCACCGAATCG GGCGCGCCCACCGGCGACAAGCATGTGCTGTTGTGGAACCCGCCGGTGGTCAATGCGGATCTGGGCCTGCGTGCCTCGGC GCGTTCGCAGAGCAACCGCATCGCGCGCATTGCCATCAAGAGCGGCCTGAAGACGCTGGTGTTCGCGCAGACGCGCCTGA TGGTGGAAGTGCTGACCAAGTATCTGAAGGACATCTTCGACCACGACCCGCGCAAGCCGGCACGCATTCGCGCCTACCGC GGCGGCTATCTGCCCACCGAGCGTCGCGAGGTAGAGCGTGCGATGCGTGCGGGCAATATCGACGGCATCATTTCCACCTC CGCGCTGGAGCTGGGCGTGGATATCGGCGCACTGGACGTGGTGATCCTCAACGGCTACCCCGGCAGCGTGGCCGCCACCT GGCAGCGCTTCGGCCGCGCCGGGCGCCGCCAGCAACCGGCACTGGGCGTGCTGGTGGCCAGCTCGCAACCGCTGGACCAA TACGTGGTGCGGCACCCGGATTTCTTCGCCGATGCCTCGCCCGAACATGCGCGTACCGCGCCGGACCAACCGCTGATCCT GTTCGATCACATCCGTTGCGCGGCCTTCGAGCTGCCGTTCATCGCCGACGAGCCATTCGGCCCGATCGACCCGCTGGTGT TCCTGGAAGCGCTGGCCGAAAGCGAGGTGATCCACCAGGAAGGCGACCGCTGGGAATGGATCGCCGACAGCTACCCGGCC AATGCGGTGAGCCTGCGCTCGGTGGCCGACGGCAATTTCGTGGTGGTGGACAAGAGCGACGGCAAGCAGCAGATCATCGC CGAGGTGGATTATTCGGCCGCTGCGCTCACCTTGTACGAAGGCGCCATCCACATGGTGCAGAGCACGCCGTACCAGGTGG AGCGGCTGGACTGGGAAGGCCGCAAGGCGTACGTGACGCGCACGCATGTGGACTACTACACCGACAGCATCGACTACACC AAGTTGAAGGTGCTGGACCGCTTCGACGGCGGCGTGGCCGGCCGTGGCGACTCGCACCACGGCGAAGTGCATGTGGTGCG GCGCGTGTCCGGCTACAAGAAGATCCGCTACTACACGCACGAAAACATCGGCTACGGGCCGGTGAATCTGCCCGACCAGG AATTGCACACCACCGCGGTATGGTGGCAGTTGCCGCAGGCGACCCTGGGCAAGGCCTTTGCGTCCAAGCAGGATGCGCTG GATGGCTTCCTCGGTGCTGCCTACGCGCTGCACGTGGTCGCCACGGTGGCGGTGATGGCCGATGCGCGCGATCTGCAAAA GGCCGTAGGCAATGGCGATGGCGCGTGGTTTGCGGTAGCCGACCAGACCGGGCGCGGGCAGCTGCGCGGCGTGGAAGAAG GCGATGCGGCCACGGTGGAATTGCAGCAGGCGTTCGTGCCCACGGTGTATCTGTACGACAACTTCCCTGGCGGGGTGGGC TTGAGCGAGCCGCTGTGGCTGCGCCAGGCCGAGCTGCTGCAGCGCGCCGACGAGCTGGTGCGGCGTTGCGATTGCAGCGC CGGGTGCCCGGCGTGCGTGGGCCCGGTGCTGGCCGCGCACGAGGCCGCCAAGGGCGAATCGCCCAAGTCGCTGGCGCTGA CGGTGCTGGCGTTGTTGTTCGATGCCGATGCGCCGTTGCGGCATGCCACGCAGGTGGACGACGACCTGGCGCTGGACGTG CTTGCATGA
Upstream 100 bases:
>100_bases GAGCCCTTGCCGTATGCCGCCGTTTGCCCTCGCTCCCCGCACCGAAACCGCCGAACGCGCGCTGGCCACCACCGACGGCC GGCCCAGCCGCGATGGCGCC
Downstream 100 bases:
>100_bases GTGTGAGCGCGGACCGGCTGCGCTTGCTGCGGCGTCAGGCCGGGCAGGCGGATGTGCCTGCGCCGGCGAAGGCTGACGAT GGCGATGCGCTGCACGATGC
Product: ATP-dependent RNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MLTERLEWRYHDRITGSFTIPGRTGRYAPIPGDVPGALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSLC YTLPVVSAAMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAIL PHHTKWAQFFENLRYVVIDEIHTYRGVFGSHVTNVLRRLKRICAFYGATPQFILCSATIGNPHAHAQALIEEQVHGITES GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYR GGYLPTERREVERAMRAGNIDGIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQ YVVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELPFIADEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYT KLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTHENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDAL DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVG LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEAAKGESPKSLALTVLALLFDADAPLRHATQVDDDLALDV LA
Sequences:
>Translated_802_residues MLTERLEWRYHDRITGSFTIPGRTGRYAPIPGDVPGALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSLC YTLPVVSAAMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAIL PHHTKWAQFFENLRYVVIDEIHTYRGVFGSHVTNVLRRLKRICAFYGATPQFILCSATIGNPHAHAQALIEEQVHGITES GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYR GGYLPTERREVERAMRAGNIDGIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQ YVVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELPFIADEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYT KLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTHENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDAL DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVG LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEAAKGESPKSLALTVLALLFDADAPLRHATQVDDDLALDV LA >Mature_802_residues MLTERLEWRYHDRITGSFTIPGRTGRYAPIPGDVPGALADALQARGISQLYSHQADAWAATQRGEHVAIVTPTASGKSLC YTLPVVSAAMTSGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAIL PHHTKWAQFFENLRYVVIDEIHTYRGVFGSHVTNVLRRLKRICAFYGATPQFILCSATIGNPHAHAQALIEEQVHGITES GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYR GGYLPTERREVERAMRAGNIDGIISTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQ YVVRHPDFFADASPEHARTAPDQPLILFDHIRCAAFELPFIADEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYT KLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTHENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDAL DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVG LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEAAKGESPKSLALTVLALLFDADAPLRHATQVDDDLALDV LA
Specific function: Unknown
COG id: COG1205
COG function: function code R; Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320497, Length=765, Percent_Identity=32.4183006535948, Blast_Score=380, Evalue=1e-106,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR018973 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF09369 DUF1998; PF00271 Helicase_C [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 87700; Mature: 87700
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTERLEWRYHDRITGSFTIPGRTGRYAPIPGDVPGALADALQARGISQLYSHQADAWAA CCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHH TQRGEHVAIVTPTASGKSLCYTLPVVSAAMTSGAKALYLFPTKALAQDQVAELLELNRAG HCCCCEEEEEECCCCCCCEEEEHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC ELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLRYVVIDE CCCEEEEEECCCCCCHHHHHEEEECCEEECCHHHHHHHHCCCCHHHHHHHHCCCEEEEEH IHTYRGVFGSHVTNVLRRLKRICAFYGATPQFILCSATIGNPHAHAQALIEEQVHGITES HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTK CCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHH YLKDIFDHDPRKPARIRAYRGGYLPTERREVERAMRAGNIDGIISTSALELGVDIGALDV HHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHCCCCCEEEE VILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFADASPEHARTA EEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCC PDQPLILFDHIRCAAFELPFIADEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA CCCCEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEG CCEEEEEECCCCEEEEECCCCCHHHHEECCCCHHEEHHHHHHHHHHHCCCCEEEECCCCC RKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTH CEEEEEEEEEEEECCCCCCHHEEEEHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC ENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDALDGFLGAAYALHVVATVAVMA CCCCCCCCCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DARDLQKAVGNGDGAWFAVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVG HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEHHHHCCEEEEEECCCCCCC LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEAAKGESPKSLALTVLALLF CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH DADAPLRHATQVDDDLALDVLA CCCCCHHHHHCCCCCCCCEECC >Mature Secondary Structure MLTERLEWRYHDRITGSFTIPGRTGRYAPIPGDVPGALADALQARGISQLYSHQADAWAA CCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHH TQRGEHVAIVTPTASGKSLCYTLPVVSAAMTSGAKALYLFPTKALAQDQVAELLELNRAG HCCCCEEEEEECCCCCCCEEEEHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC ELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLRYVVIDE CCCEEEEEECCCCCCHHHHHEEEECCEEECCHHHHHHHHCCCCHHHHHHHHCCCEEEEEH IHTYRGVFGSHVTNVLRRLKRICAFYGATPQFILCSATIGNPHAHAQALIEEQVHGITES HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTK CCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHH YLKDIFDHDPRKPARIRAYRGGYLPTERREVERAMRAGNIDGIISTSALELGVDIGALDV HHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHCCCCCEEEE VILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFADASPEHARTA EEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCC PDQPLILFDHIRCAAFELPFIADEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA CCCCEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEG CCEEEEEECCCCEEEEECCCCCHHHHEECCCCHHEEHHHHHHHHHHHCCCCEEEECCCCC RKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTH CEEEEEEEEEEEECCCCCCHHEEEEHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC ENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDALDGFLGAAYALHVVATVAVMA CCCCCCCCCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DARDLQKAVGNGDGAWFAVADQTGRGQLRGVEEGDAATVELQQAFVPTVYLYDNFPGGVG HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEHHHHCCEEEEEECCCCCCC LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEAAKGESPKSLALTVLALLF CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH DADAPLRHATQVDDDLALDVLA CCCCCHHHHHCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]