| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is hsdR [H]
Identifier: 21228807
GI number: 21228807
Start: 3232922
End: 3235603
Strand: Reverse
Name: hsdR [H]
Synonym: MM_2705
Alternate gene names: 21228807
Gene position: 3235603-3232922 (Counterclockwise)
Preceding gene: 21228809
Following gene: 21228806
Centisome position: 78.99
GC content: 43.74
Gene sequence:
>2682_bases ATGGCTAAACTCAATGAAGCTGAGACACGGAAAAGACTGATAGATCCGATGCTTGCTGCTGCAGGGTGGAATATCGTTTT CTATGATAAGACAAAAAGACAAGATAATTACAATAATTGTGCGATAAGAGAGTATCCAACTGATTACGGACCTGCAGATT ATGCGCTTTGCGTAGGAGGAAAAATCCTCGGAATTATTGAGGCAAAGAAAGAAGAGTCTGGTACACAAAGTGTTTTAACT CAGGCTGAAAGGTATTCACGTGGGCTTTCAAATAACCCTTTCAATTTTAACGGATACAGAGTTCCTTTTTTATATTCCAC TAACGGAAAAGATATCCGGCACCACGATGTACGCCCTGCTCTTAGCCGTTCGAGACCAATATTCGGATTTCACACACCTG AGGCGCTGGTTGAGAAGTTAAATTATGACTCTGAAGATAGAAGTACCACATTTTTTGAGATCCCTGATAATACAAGAATG AGACCATATCAGCGTGAAGCCTGTGATGCTATAGGGAGGGCTATTGTTGATCGGAAACGGACAATGCTGGTCGCAATGGC TACCGGAACCGGGAAGACATTTACGATTGTCAATCTTATTTACCGCTTGATTAAGGCAGGGGTTGCAAAAAGAGTCCTGT TTCTTGTTGACAGAAGAGCACTTGCTGCGCAGGCGGTCAGGGCTTTTTCGTCCTTTGAAACTGAGCAGGGACTGAAATTT GATAAAACCTATGAGGTTTACAGCCAGCATTTTCAAAGAGGCGATTTGGATGAAAACGAAGCTTTTGATTCAAATTTGAT CCCTGAAGCCTACCTTACAGACCCGAAGCCAGAGCACAGTTTTGTATATGTATCCACAATTCAGCGGATGACCATTAACC TGTTCGGAAAGGCTTCTGATTATTCATGCAGTGACGAGCCCGAGGATGAAGATGCAGGGCAGCTTGATATTCCAATTCAT GCTTTTGACCTGATCATAGCTGACGAATGTCACAGGGGTTATTCCGCACAGGAGGTTTCGGTTTGGAGAGACACACTTGA CCATTTTGATGCTATAAAAGTAGGGCTTACGGCTACGCCTGCTGCTCATACACTTGCATACTTTAAAGATGTCGTTTATA AATACGGTTATGAACAGGCTGTCAGAGACGGATATCTAGTTGACTATGATATTGTTGCACTGGAATCAGGCGTCCGCATG AGTGGGATATTCCTTCGTGAAGGAGAAATGGTCGGAGTTATAGATTCCGAAACAGGGCAAAGTAAAATAGACACTCTTGA AGACGAACGTGAGTTCTCGGCTGAGAAGATCGAGAAGGAGATTACTAATATTGATTCTAATAAAAAAATCCTTCAGGAGA TCAAACGGTATGCCGATGAGCATGAAGAAAGATATGGACGCTTTCCAAAGACCCTGATCTTTGCCGTACAGGACCTGGCA AATTCTTCTTCCCATGCTGACCAGATAGTTGATCAGGCAAGGGATATTTTTGGTAGAGGGGATTCGTTCGTCCAGAAGAT TACAGGCAAAGTTGACCGACCTTTGCAGAGGATAAGGGAGTTCCGGAATAGGAAAGAGCCTGGAATAGCAGTAACGGTTG ACCTTCTTTCAACAGGGGTTGATGTCCCGGATATCGAGTATATTGTGTTTTTAAGATCCATGAAATCCCGAATCCTGTTT GAACAGATGATCGGGCGTGGTACGCGCAAAGGGGAACATTATCCCGATAAGTCTCATTTTGTCGTTTTTGACTGCTTTGG CGGGACCCTCATTGATTATTTCAAAGGGGTTACGGGTGTAACAGCCGAACCGCCCAGAAAGGAAGTAAAACCGATAAAAA AGGTTATTGAAGATATATGGAATAACCGGGACAGGGCTTATAATGTGCGTGTCCTGACAAAAAGGCTCAACAGAATCGAT AAGGAGATGAGCGGAGAATCCCGGGATATGTTCAGCGCTTTTGTAGAAAAAGGTGATCTGAACCGATTTGCTATCTCTCT TGAAAGGCGGCTTTCAGAGGACTTTACAGGGACGATGGGAATCCTGAGAAATCCTGACTTTTTGAACCTCCTTGAGAATT ACCCCAGACCACCAAAGACTTTCCTTGTGGATTATGCAATAAGGGACGTGGTTTCATCCACATGGATAGTCAGGGATGCG GCTGGCAAAGAATATAAACCGGATGATTATCTGAGTATTTTTTCTGATTTTGTAAAAGAGAATTTCGAAAAGATTGCTGC AATCGGCATTCTTCTTGACCGCCCGCAGGAATGGAACACGGATGCACTTGGAGAGTTAAAAGAGAAACTTGAGTCTTCCC AGCAGCGGTTCACTATCGAAAATTTGCAGAGGGCACACAAAGAGAAATATAATAAAGCTCTTGTGGACATTATTTCGATG ATCAAGCACGCTGCCCGCGAAGAAGAGTCTCTCCTGACAGCGGAAGAACGGGTCAGCCTGGCTTTTGACCGGGTAACCGT GGGAAAAGATTTTACATCTGATCAGCGTTTATGGCTTGACCGCATCAGATCGCATTTGATTGCAAACCTCTCCATTGACA AAGAGGACTTTGAATATATTCCCGTGTTTTCCGATTACGGCGGCTGGAATAAAGCTAACCGTGTTTTTGAAGGCAAGCTT TCTACTTTGATTTCAGAATTTAACAGGGCAGTTGCAGCATGA
Upstream 100 bases:
>100_bases ATATCAATAAAAAAACTCCAACTTATTTATACAAATAAATATAATCTGTGATGAAGTTTAAATTCCCATAACAAATCCCC AATAATTATGATGATTTACA
Downstream 100 bases:
>100_bases GTGATATTGTACAGAAATTATGGGGTTTTTGCCACACTTTACGGCATGAAGGTATCGATTACGGCGATTATATCGAACAA ATTACATACCTGCTTTTTTT
Product: type I restriction-modification system restriction subunit
Products: NA
Alternate protein names: R.EcoKI [H]
Number of amino acids: Translated: 893; Mature: 892
Protein sequence:
>893_residues MAKLNEAETRKRLIDPMLAAAGWNIVFYDKTKRQDNYNNCAIREYPTDYGPADYALCVGGKILGIIEAKKEESGTQSVLT QAERYSRGLSNNPFNFNGYRVPFLYSTNGKDIRHHDVRPALSRSRPIFGFHTPEALVEKLNYDSEDRSTTFFEIPDNTRM RPYQREACDAIGRAIVDRKRTMLVAMATGTGKTFTIVNLIYRLIKAGVAKRVLFLVDRRALAAQAVRAFSSFETEQGLKF DKTYEVYSQHFQRGDLDENEAFDSNLIPEAYLTDPKPEHSFVYVSTIQRMTINLFGKASDYSCSDEPEDEDAGQLDIPIH AFDLIIADECHRGYSAQEVSVWRDTLDHFDAIKVGLTATPAAHTLAYFKDVVYKYGYEQAVRDGYLVDYDIVALESGVRM SGIFLREGEMVGVIDSETGQSKIDTLEDEREFSAEKIEKEITNIDSNKKILQEIKRYADEHEERYGRFPKTLIFAVQDLA NSSSHADQIVDQARDIFGRGDSFVQKITGKVDRPLQRIREFRNRKEPGIAVTVDLLSTGVDVPDIEYIVFLRSMKSRILF EQMIGRGTRKGEHYPDKSHFVVFDCFGGTLIDYFKGVTGVTAEPPRKEVKPIKKVIEDIWNNRDRAYNVRVLTKRLNRID KEMSGESRDMFSAFVEKGDLNRFAISLERRLSEDFTGTMGILRNPDFLNLLENYPRPPKTFLVDYAIRDVVSSTWIVRDA AGKEYKPDDYLSIFSDFVKENFEKIAAIGILLDRPQEWNTDALGELKEKLESSQQRFTIENLQRAHKEKYNKALVDIISM IKHAAREEESLLTAEERVSLAFDRVTVGKDFTSDQRLWLDRIRSHLIANLSIDKEDFEYIPVFSDYGGWNKANRVFEGKL STLISEFNRAVAA
Sequences:
>Translated_893_residues MAKLNEAETRKRLIDPMLAAAGWNIVFYDKTKRQDNYNNCAIREYPTDYGPADYALCVGGKILGIIEAKKEESGTQSVLT QAERYSRGLSNNPFNFNGYRVPFLYSTNGKDIRHHDVRPALSRSRPIFGFHTPEALVEKLNYDSEDRSTTFFEIPDNTRM RPYQREACDAIGRAIVDRKRTMLVAMATGTGKTFTIVNLIYRLIKAGVAKRVLFLVDRRALAAQAVRAFSSFETEQGLKF DKTYEVYSQHFQRGDLDENEAFDSNLIPEAYLTDPKPEHSFVYVSTIQRMTINLFGKASDYSCSDEPEDEDAGQLDIPIH AFDLIIADECHRGYSAQEVSVWRDTLDHFDAIKVGLTATPAAHTLAYFKDVVYKYGYEQAVRDGYLVDYDIVALESGVRM SGIFLREGEMVGVIDSETGQSKIDTLEDEREFSAEKIEKEITNIDSNKKILQEIKRYADEHEERYGRFPKTLIFAVQDLA NSSSHADQIVDQARDIFGRGDSFVQKITGKVDRPLQRIREFRNRKEPGIAVTVDLLSTGVDVPDIEYIVFLRSMKSRILF EQMIGRGTRKGEHYPDKSHFVVFDCFGGTLIDYFKGVTGVTAEPPRKEVKPIKKVIEDIWNNRDRAYNVRVLTKRLNRID KEMSGESRDMFSAFVEKGDLNRFAISLERRLSEDFTGTMGILRNPDFLNLLENYPRPPKTFLVDYAIRDVVSSTWIVRDA AGKEYKPDDYLSIFSDFVKENFEKIAAIGILLDRPQEWNTDALGELKEKLESSQQRFTIENLQRAHKEKYNKALVDIISM IKHAAREEESLLTAEERVSLAFDRVTVGKDFTSDQRLWLDRIRSHLIANLSIDKEDFEYIPVFSDYGGWNKANRVFEGKL STLISEFNRAVAA >Mature_892_residues AKLNEAETRKRLIDPMLAAAGWNIVFYDKTKRQDNYNNCAIREYPTDYGPADYALCVGGKILGIIEAKKEESGTQSVLTQ AERYSRGLSNNPFNFNGYRVPFLYSTNGKDIRHHDVRPALSRSRPIFGFHTPEALVEKLNYDSEDRSTTFFEIPDNTRMR PYQREACDAIGRAIVDRKRTMLVAMATGTGKTFTIVNLIYRLIKAGVAKRVLFLVDRRALAAQAVRAFSSFETEQGLKFD KTYEVYSQHFQRGDLDENEAFDSNLIPEAYLTDPKPEHSFVYVSTIQRMTINLFGKASDYSCSDEPEDEDAGQLDIPIHA FDLIIADECHRGYSAQEVSVWRDTLDHFDAIKVGLTATPAAHTLAYFKDVVYKYGYEQAVRDGYLVDYDIVALESGVRMS GIFLREGEMVGVIDSETGQSKIDTLEDEREFSAEKIEKEITNIDSNKKILQEIKRYADEHEERYGRFPKTLIFAVQDLAN SSSHADQIVDQARDIFGRGDSFVQKITGKVDRPLQRIREFRNRKEPGIAVTVDLLSTGVDVPDIEYIVFLRSMKSRILFE QMIGRGTRKGEHYPDKSHFVVFDCFGGTLIDYFKGVTGVTAEPPRKEVKPIKKVIEDIWNNRDRAYNVRVLTKRLNRIDK EMSGESRDMFSAFVEKGDLNRFAISLERRLSEDFTGTMGILRNPDFLNLLENYPRPPKTFLVDYAIRDVVSSTWIVRDAA GKEYKPDDYLSIFSDFVKENFEKIAAIGILLDRPQEWNTDALGELKEKLESSQQRFTIENLQRAHKEKYNKALVDIISMI KHAAREEESLLTAEERVSLAFDRVTVGKDFTSDQRLWLDRIRSHLIANLSIDKEDFEYIPVFSDYGGWNKANRVFEGKLS TLISEFNRAVAA
Specific function: The EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=1001, Percent_Identity=29.3706293706294, Blast_Score=335, Evalue=7e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR021943 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR007409 [H]
Pfam domain/function: PF12082 DUF3559; PF00271 Helicase_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 102260; Mature: 102128
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKLNEAETRKRLIDPMLAAAGWNIVFYDKTKRQDNYNNCAIREYPTDYGPADYALCVGG CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEECC KILGIIEAKKEESGTQSVLTQAERYSRGLSNNPFNFNGYRVPFLYSTNGKDIRHHDVRPA EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHH LSRSRPIFGFHTPEALVEKLNYDSEDRSTTFFEIPDNTRMRPYQREACDAIGRAIVDRKR HHCCCCCEECCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC TMLVAMATGTGKTFTIVNLIYRLIKAGVAKRVLFLVDRRALAAQAVRAFSSFETEQGLKF EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DKTYEVYSQHFQRGDLDENEAFDSNLIPEAYLTDPKPEHSFVYVSTIQRMTINLFGKASD CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEHHHHHHHHHHHEECCCC YSCSDEPEDEDAGQLDIPIHAFDLIIADECHRGYSAQEVSVWRDTLDHFDAIKVGLTATP CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC AAHTLAYFKDVVYKYGYEQAVRDGYLVDYDIVALESGVRMSGIFLREGEMVGVIDSETGQ HHHHHHHHHHHHHHHCHHHHHHCCCEEEEEHEEECCCCEEEEEEEECCCEEEEEECCCCC SKIDTLEDEREFSAEKIEKEITNIDSNKKILQEIKRYADEHEERYGRFPKTLIFAVQDLA HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH NSSSHADQIVDQARDIFGRGDSFVQKITGKVDRPLQRIREFRNRKEPGIAVTVDLLSTGV CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCC DVPDIEYIVFLRSMKSRILFEQMIGRGTRKGEHYPDKSHFVVFDCFGGTLIDYFKGVTGV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCC TAEPPRKEVKPIKKVIEDIWNNRDRAYNVRVLTKRLNRIDKEMSGESRDMFSAFVEKGDL CCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC NRFAISLERRLSEDFTGTMGILRNPDFLNLLENYPRPPKTFLVDYAIRDVVSSTWIVRDA HHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECC AGKEYKPDDYLSIFSDFVKENFEKIAAIGILLDRPQEWNTDALGELKEKLESSQQRFTIE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH NLQRAHKEKYNKALVDIISMIKHAAREEESLLTAEERVSLAFDRVTVGKDFTSDQRLWLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH RIRSHLIANLSIDKEDFEYIPVFSDYGGWNKANRVFEGKLSTLISEFNRAVAA HHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AKLNEAETRKRLIDPMLAAAGWNIVFYDKTKRQDNYNNCAIREYPTDYGPADYALCVGG CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEECC KILGIIEAKKEESGTQSVLTQAERYSRGLSNNPFNFNGYRVPFLYSTNGKDIRHHDVRPA EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHH LSRSRPIFGFHTPEALVEKLNYDSEDRSTTFFEIPDNTRMRPYQREACDAIGRAIVDRKR HHCCCCCEECCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC TMLVAMATGTGKTFTIVNLIYRLIKAGVAKRVLFLVDRRALAAQAVRAFSSFETEQGLKF EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DKTYEVYSQHFQRGDLDENEAFDSNLIPEAYLTDPKPEHSFVYVSTIQRMTINLFGKASD CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEHHHHHHHHHHHEECCCC YSCSDEPEDEDAGQLDIPIHAFDLIIADECHRGYSAQEVSVWRDTLDHFDAIKVGLTATP CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC AAHTLAYFKDVVYKYGYEQAVRDGYLVDYDIVALESGVRMSGIFLREGEMVGVIDSETGQ HHHHHHHHHHHHHHHCHHHHHHCCCEEEEEHEEECCCCEEEEEEEECCCEEEEEECCCCC SKIDTLEDEREFSAEKIEKEITNIDSNKKILQEIKRYADEHEERYGRFPKTLIFAVQDLA HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH NSSSHADQIVDQARDIFGRGDSFVQKITGKVDRPLQRIREFRNRKEPGIAVTVDLLSTGV CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCC DVPDIEYIVFLRSMKSRILFEQMIGRGTRKGEHYPDKSHFVVFDCFGGTLIDYFKGVTGV CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCC TAEPPRKEVKPIKKVIEDIWNNRDRAYNVRVLTKRLNRIDKEMSGESRDMFSAFVEKGDL CCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC NRFAISLERRLSEDFTGTMGILRNPDFLNLLENYPRPPKTFLVDYAIRDVVSSTWIVRDA HHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECC AGKEYKPDDYLSIFSDFVKENFEKIAAIGILLDRPQEWNTDALGELKEKLESSQQRFTIE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH NLQRAHKEKYNKALVDIISMIKHAAREEESLLTAEERVSLAFDRVTVGKDFTSDQRLWLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH RIRSHLIANLSIDKEDFEYIPVFSDYGGWNKANRVFEGKLSTLISEFNRAVAA HHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3323532; 7610040; 9278503; 1650347 [H]