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The map label for this gene is ydcN [C]

Identifier: 21228496

GI number: 21228496

Start: 2855752

End: 2856330

Strand: Reverse

Name: ydcN [C]

Synonym: MM_2394

Alternate gene names: 21228496

Gene position: 2856330-2855752 (Counterclockwise)

Preceding gene: 21228497

Following gene: 21228495

Centisome position: 69.73

GC content: 49.57

Gene sequence:

>579_bases
ATGTCAGAAGAGAACCGTGTCGGCAGTAAGATACGCCAGCTTAGAGAAGCCCGGGATATGACTGTTGAAGAACTGGCTGA
AGCCAGTCAGAGCAGCTCTGAGTTAATCCAGCAGCTAGAAAACGGAGCCCTTGTTCCGTCTTTGACCCCTCTTTTAAAGA
TTGCCAGGGCTTTAGGCGTCCGCCTCGGCACTTTTCTGGACGACATGCCCCAGAGCGGACCTGTACTGGTGAGGTCAGGG
CTATCTGAAAACGTGGTCCGTTTTTCCGGAAAGACTGAGAGGCCAAAGAAAAGCGCCCTTGAGTTTTACTCCCTTGCTTC
GGATAAAGCAGACCGTCATATGGAGCCTTTCATTATTGATATCCACCCTTCCCCTGAAGAAAGCCATACGCTCTCATCTC
ATGAAGGAGAGGAGTTCATCTATGTACTTTCCGGGGAAATTGAAATTTTTTACGGGAAAGACGTTCACAGGCTGAGTGAA
GGGGACAGCATTTATTACGATTCCATTGTCCCGCACGATGTTCACGCAGCAGGAAAAGAGGATGCCCGCATAATGGCTGT
AGTCTATGCTCCTCTCTGA

Upstream 100 bases:

>100_bases
GTCTGTGCAAAAGAGATAAGCTTTACAGGCTGTTTACAGGGACTCTGGTTTACATTTTTCTGCCAGGTCCCCCAAGAGAA
AAATGTTGAGGTAGAAAATT

Downstream 100 bases:

>100_bases
CATTTAGAGTTGTGAGAGAACAGGCTATGACTTAATTGATGACTGAAAAAGCAAATTTAGATTAAAAACTGGATAATCAA
GTAAAGACATTAAGAGCTAG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Cupin Domain Protein; Transcription Regulator; Phosphate Butyryltransferase; Cupin 2 Barrel Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Merr Family; Cupin 2 Conserved Barrel Domain Protein; Cupin Sensor Transcriptional Regulator; Transcriptional Regulator-Like Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Transcriptional Regulator Protein; XRE Family-Like Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Regulatory Protein; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Phosphotransbutyrylase; Helix-Turn-Helix Family Protein

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEENRVGSKIRQLREARDMTVEELAEASQSSSELIQQLENGALVPSLTPLLKIARALGVRLGTFLDDMPQSGPVLVRSG
LSENVVRFSGKTERPKKSALEFYSLASDKADRHMEPFIIDIHPSPEESHTLSSHEGEEFIYVLSGEIEIFYGKDVHRLSE
GDSIYYDSIVPHDVHAAGKEDARIMAVVYAPL

Sequences:

>Translated_192_residues
MSEENRVGSKIRQLREARDMTVEELAEASQSSSELIQQLENGALVPSLTPLLKIARALGVRLGTFLDDMPQSGPVLVRSG
LSENVVRFSGKTERPKKSALEFYSLASDKADRHMEPFIIDIHPSPEESHTLSSHEGEEFIYVLSGEIEIFYGKDVHRLSE
GDSIYYDSIVPHDVHAAGKEDARIMAVVYAPL
>Mature_191_residues
SEENRVGSKIRQLREARDMTVEELAEASQSSSELIQQLENGALVPSLTPLLKIARALGVRLGTFLDDMPQSGPVLVRSGL
SENVVRFSGKTERPKKSALEFYSLASDKADRHMEPFIIDIHPSPEESHTLSSHEGEEFIYVLSGEIEIFYGKDVHRLSEG
DSIYYDSIVPHDVHAAGKEDARIMAVVYAPL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21324; Mature: 21193

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEENRVGSKIRQLREARDMTVEELAEASQSSSELIQQLENGALVPSLTPLLKIARALGV
CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RLGTFLDDMPQSGPVLVRSGLSENVVRFSGKTERPKKSALEFYSLASDKADRHMEPFIID
HHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
IHPSPEESHTLSSHEGEEFIYVLSGEIEIFYGKDVHRLSEGDSIYYDSIVPHDVHAAGKE
ECCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCC
DARIMAVVYAPL
CCEEEEEEEECC
>Mature Secondary Structure 
SEENRVGSKIRQLREARDMTVEELAEASQSSSELIQQLENGALVPSLTPLLKIARALGV
CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RLGTFLDDMPQSGPVLVRSGLSENVVRFSGKTERPKKSALEFYSLASDKADRHMEPFIID
HHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
IHPSPEESHTLSSHEGEEFIYVLSGEIEIFYGKDVHRLSEGDSIYYDSIVPHDVHAAGKE
ECCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCC
DARIMAVVYAPL
CCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA