| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is ybfF [C]
Identifier: 21228325
GI number: 21228325
Start: 2649351
End: 2650496
Strand: Reverse
Name: ybfF [C]
Synonym: MM_2223
Alternate gene names: 21228325
Gene position: 2650496-2649351 (Counterclockwise)
Preceding gene: 21228329
Following gene: 21228324
Centisome position: 64.7
GC content: 45.81
Gene sequence:
>1146_bases ATGATGTATAAGCTGGGCATGCCCTCTCTTTCTATCGTAATGCCTTCCATGAATGAGGAAGAAACTATTCGTATCTGTAT AGAGAAAGCCCAGTATATATTCAAAAAATATGGTATAGAGGGGGAAATAATAGTTGCTGATAATTCTTCTGACAGAACTG CAGAGATTGCAGCATCAATGGGTGCAAAAGTCATAGGCCCAATAAAAGGTTACGGGAATGCTTACCTCAAAGGGCTCGCA GAGGCAAAAGGGGACTACATTGCTATCGCAGATGCAGACAACACCTATGACCTCCTTGAACTTGACAGGTTTCTGGATCC CCTTATGTCAGGAGAAGCAGATTTCATAATGGGCACGCGGCTTAAGGGAGAAATTAAAGCAGGAGCCATGCCCTGGCTGC ACCAGTACATAGGCAATCCCATACTGACAGGAATGCTTAATTTCCTGTTCAAAACGAAAATCTCGGACGCACACTGCGGG ATGAGGGCTTTTACTAAAGAAGCCCTTGAGAAAATGGATCTTAAAACTCACGGCATGGAACTCGCATCTGAGATGGTGAT CGAAGCTGCAAGATGCGGGCTCCGAATTAAGGAAGTTCCCATAACATATTATTCACGCAAAGCTCCCTCCAAACTTCGCT CATTTCAGGACGGCTGGCGGCATGTAAGATTTATGATGTTATACAGGCCTGTCCCTTTCCTCTATATCCCAGGAGCTTTC GTATTTCTCCTGGGTTTCCTTATAACCGCTTCCCTTCTTCTTACGAACAACGCTGCATATAACCGTCTGCATTCCTTTAT CTTGGGCAGCATGCTCTTAATTATTGGCGGGCAGATCCTTGCAACCGGCGGGTACATGAAAACATACGGAATTATCCACG GCATGTACCGCGATGACGAAAAAGGTAGAAAGCTTCTGAGCTACCATTCCCTTGAAAAAGAGCTTGTAGGAGGATCCCTT ATCCTGGGCTCAGGATGTATTATCGGACTGAAAGTTGCCTATACCTGGGCCAGTACAGGCTATGGCACCCTTGAAGAGGT GGAGTCTGCGGTAATCTCAATGGTCCTTGCAGCAATCGGGCTTCAGCTGATTTTTGCTGCGATATTTGTAAGTGTAATGC TCCTTGAAGTTGACACCGACTGGTAA
Upstream 100 bases:
>100_bases CTGATACTTTATATAGCTTGTTAGCAGAAGTCACGCCCTTTTCCCGGGCTTATTTTATACTGCTTATCTTTCTGAAGTAT CAAAATAGTTATTAAGAAAT
Downstream 100 bases:
>100_bases AGTGATCAGATGAAAGTTGCCTTTGTATACGATGCTGTCTATCCCTGGGTCAAGGGCGGCGCTGAGGTGCGCATCCATGA GCTGGGGAGGAGGCTTTCCT
Product: dolichyl-phosphate glucose synthetase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MMYKLGMPSLSIVMPSMNEEETIRICIEKAQYIFKKYGIEGEIIVADNSSDRTAEIAASMGAKVIGPIKGYGNAYLKGLA EAKGDYIAIADADNTYDLLELDRFLDPLMSGEADFIMGTRLKGEIKAGAMPWLHQYIGNPILTGMLNFLFKTKISDAHCG MRAFTKEALEKMDLKTHGMELASEMVIEAARCGLRIKEVPITYYSRKAPSKLRSFQDGWRHVRFMMLYRPVPFLYIPGAF VFLLGFLITASLLLTNNAAYNRLHSFILGSMLLIIGGQILATGGYMKTYGIIHGMYRDDEKGRKLLSYHSLEKELVGGSL ILGSGCIIGLKVAYTWASTGYGTLEEVESAVISMVLAAIGLQLIFAAIFVSVMLLEVDTDW
Sequences:
>Translated_381_residues MMYKLGMPSLSIVMPSMNEEETIRICIEKAQYIFKKYGIEGEIIVADNSSDRTAEIAASMGAKVIGPIKGYGNAYLKGLA EAKGDYIAIADADNTYDLLELDRFLDPLMSGEADFIMGTRLKGEIKAGAMPWLHQYIGNPILTGMLNFLFKTKISDAHCG MRAFTKEALEKMDLKTHGMELASEMVIEAARCGLRIKEVPITYYSRKAPSKLRSFQDGWRHVRFMMLYRPVPFLYIPGAF VFLLGFLITASLLLTNNAAYNRLHSFILGSMLLIIGGQILATGGYMKTYGIIHGMYRDDEKGRKLLSYHSLEKELVGGSL ILGSGCIIGLKVAYTWASTGYGTLEEVESAVISMVLAAIGLQLIFAAIFVSVMLLEVDTDW >Mature_381_residues MMYKLGMPSLSIVMPSMNEEETIRICIEKAQYIFKKYGIEGEIIVADNSSDRTAEIAASMGAKVIGPIKGYGNAYLKGLA EAKGDYIAIADADNTYDLLELDRFLDPLMSGEADFIMGTRLKGEIKAGAMPWLHQYIGNPILTGMLNFLFKTKISDAHCG MRAFTKEALEKMDLKTHGMELASEMVIEAARCGLRIKEVPITYYSRKAPSKLRSFQDGWRHVRFMMLYRPVPFLYIPGAF VFLLGFLITASLLLTNNAAYNRLHSFILGSMLLIIGGQILATGGYMKTYGIIHGMYRDDEKGRKLLSYHSLEKELVGGSL ILGSGCIIGLKVAYTWASTGYGTLEEVESAVISMVLAAIGLQLIFAAIFVSVMLLEVDTDW
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4503363, Length=210, Percent_Identity=30, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71999402, Length=212, Percent_Identity=27.3584905660377, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24585265, Length=213, Percent_Identity=30.9859154929577, Blast_Score=82, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 42167; Mature: 42167
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMYKLGMPSLSIVMPSMNEEETIRICIEKAQYIFKKYGIEGEIIVADNSSDRTAEIAASM CEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHC GAKVIGPIKGYGNAYLKGLAEAKGDYIAIADADNTYDLLELDRFLDPLMSGEADFIMGTR CCCEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECC LKGEIKAGAMPWLHQYIGNPILTGMLNFLFKTKISDAHCGMRAFTKEALEKMDLKTHGME CCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHCHHHHHHH LASEMVIEAARCGLRIKEVPITYYSRKAPSKLRSFQDGWRHVRFMMLYRPVPFLYIPGAF HHHHHHHHHHHCCCEEEECCEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH VFLLGFLITASLLLTNNAAYNRLHSFILGSMLLIIGGQILATGGYMKTYGIIHGMYRDDE HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHCCCCH KGRKLLSYHSLEKELVGGSLILGSGCIIGLKVAYTWASTGYGTLEEVESAVISMVLAAIG HHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH LQLIFAAIFVSVMLLEVDTDW HHHHHHHHHHHHHHHEECCCC >Mature Secondary Structure MMYKLGMPSLSIVMPSMNEEETIRICIEKAQYIFKKYGIEGEIIVADNSSDRTAEIAASM CEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHC GAKVIGPIKGYGNAYLKGLAEAKGDYIAIADADNTYDLLELDRFLDPLMSGEADFIMGTR CCCEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECC LKGEIKAGAMPWLHQYIGNPILTGMLNFLFKTKISDAHCGMRAFTKEALEKMDLKTHGME CCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHCHHHHHHH LASEMVIEAARCGLRIKEVPITYYSRKAPSKLRSFQDGWRHVRFMMLYRPVPFLYIPGAF HHHHHHHHHHHCCCEEEECCEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHH VFLLGFLITASLLLTNNAAYNRLHSFILGSMLLIIGGQILATGGYMKTYGIIHGMYRDDE HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHCCCCH KGRKLLSYHSLEKELVGGSLILGSGCIIGLKVAYTWASTGYGTLEEVESAVISMVLAAIG HHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH LQLIFAAIFVSVMLLEVDTDW HHHHHHHHHHHHHHHEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]