Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21228104

Identifier: 21228104

GI number: 21228104

Start: 2385083

End: 2386777

Strand: Direct

Name: 21228104

Synonym: MM_2002

Alternate gene names: NA

Gene position: 2385083-2386777 (Clockwise)

Preceding gene: 21228088

Following gene: 21228105

Centisome position: 58.22

GC content: 45.07

Gene sequence:

>1695_bases
GTGGTTTTATTTATTACCATTCCTTCAGAGGGTGCTATTGAACAGCGGGGCCAGCTTATAAGCATCGCAGCGGGAGACCA
TCACATTCTCAATGCGGAAAATTGCCCGGGGTTTTATTATTCAACAACTTCAGGAACATATTATGAAACTCTGGAGCTTA
CTTTTGCCGAAGACGGGTTTATTGACACCGGAGACGCAATCTATACTTCCAAAATCACTTCCGGTTCAACTGCTTTTTTT
GGGAAGAAATATAAGGTTCTTGAGGACGGGCTGCTCAGTGAGAGCCTCATCAGTTCCGGAAGCCGTGATCTTCAAAGGGG
AAACGATTTTGATCTCGGGCACGGATGTAAACTGGTTCTTCAGGGCATAAACGGGAATTATGCCCTTCTCGAGCTCCAGA
AAAATTCCGTGCAGGTTACCACAAAAACCGTGGAAGAAGGTTCCAAATTTAATTTCACGACAGAGGTCGACGGCAAAGAG
TATGTTATCCTTGAAGGGACCCTGGAAAAGGTTCTTGACAGCAGGGACCCTATAGTGCGCCTTAAAAGCGTAAACCATTA
TTCGGATACTCCTCGCAGGATTGAAAAAGGGGATGAATACGGAAAGTTCGAAGTCAGCTCGGTTACAAATAAGAGTATAG
AATTGAAAAACAAAGCACCTATCAGGATGCAGCCCGGGGACCACATAACCGTCCTTGACAACCTGATTGATTTGAGAGTT
GCTGATACTGTTTACAGGGCATGTTCTTACAACATGACCCAGGACACTATAAAATCGTATAAAATCAGGGGCACATCCTT
AACTGTAAACCGGTCTGATTCCTATCCTGACGCCTGCAACTGGACAGCAGATTCTTTTGGCATGCTATTCTATGACCCGG
AATACGACCTCAGTACGGAAAGCCTCAGCATAACGCTTGACGCCGGAAACGACTGGGTCCCCGAAGGAGGCCTTGTTTAT
GAATCCCTGCCTGTTAAGGTAACTTATGAAAACCCGGAAATGATGGATTACGGAACAGACTGGTTTAATCAGGGATACTC
AGCGCTTGGCTGGAACGGTGAAGAATACGCATACCTCGGAACTGATAGAGGTATTGTAAATATCCTTCTGGAAGAAGATG
AGAAAATCCTCTACCCGAATGAAGAATACGACCTTAAAGAAGGGTATACCCTGAAAGTTACAGATCTGGCATCGGATAAA
GCCTGCCTCACTCTTTCCAGGAACAAACTCCCGGTTTATTCAAGCATAATCTCTCCCGGTAAATCCGCTGACCTGGGAAC
TCACACTTTCCTCTACAAAAAGGAATTAAATGGTGTGGAGGTGCCCCTTTTTTCAGTATATGTTGACAGTGTAATACAGG
GAGATGAACTCTCTGCTGTTAACCTGAAACACCTCCTGCACTTCTCTGACAGCCCGCTTGAGCTGAATTACGGAAAGGAG
TACGGAGAGCTTACTATTGTTGAAACATATCCGAAACTCAGGCTCGAAAATAAGCATGTGGTCTGGTCCGGTTCGGATAT
CAATGTAACGGAGGATATCTGGATTGGAAGGTTTGAAAAGAAGACCGCGGGGAATCTCTTTGTTACCTTTTACCCTTACA
TGAATAAGGTGGAAAATGTAAGGTCCATCCTTCCGTCCGTTTCAAGCTGGTCCATACCGGCTATGAGTATTGAAGAATAC
CTGATAGGAGTCTGA

Upstream 100 bases:

>100_bases
GAAAAGATTATTTAGTAATACTATTCATGCTATTCTTATGGATATTATTGATGATAATCGTATTATTTTACCATTTAAGT
ATTCAGTTTTTTTTCTAATA

Downstream 100 bases:

>100_bases
AAATAAACCGGGGCAAAAATATGAAGAACCATAATATTGCTGTCTATCCCTTTACCGCCATAGTCGGGCAGGAGAAAATG
AAAAAAGCCCTTGTCCTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGFIDTGDAIYTSKITSGSTAFF
GKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVLQGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKE
YVILEGTLEKVLDSRDPIVRLKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV
ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTESLSITLDAGNDWVPEGGLVY
ESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLGTDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDK
ACLTLSRNKLPVYSSIISPGKSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE
YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENVRSILPSVSSWSIPAMSIEEY
LIGV

Sequences:

>Translated_564_residues
MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGFIDTGDAIYTSKITSGSTAFF
GKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVLQGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKE
YVILEGTLEKVLDSRDPIVRLKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV
ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTESLSITLDAGNDWVPEGGLVY
ESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLGTDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDK
ACLTLSRNKLPVYSSIISPGKSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE
YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENVRSILPSVSSWSIPAMSIEEY
LIGV
>Mature_564_residues
MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGFIDTGDAIYTSKITSGSTAFF
GKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVLQGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKE
YVILEGTLEKVLDSRDPIVRLKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV
ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTESLSITLDAGNDWVPEGGLVY
ESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLGTDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDK
ACLTLSRNKLPVYSSIISPGKSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE
YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENVRSILPSVSSWSIPAMSIEEY
LIGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63186; Mature: 63186

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGF
CEEEEEECCCCCHHHCCCEEEEECCCCEEECCCCCCCEEEECCCCCEEEEEEEEEECCCC
IDTGDAIYTSKITSGSTAFFGKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVL
EECCCEEEEEEECCCCEEECCCEEEHHHCCCHHHHHHCCCCHHHHCCCCCCCCCCEEEEE
QGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKEYVILEGTLEKVLDSRDPIVR
EECCCCEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCCEEE
LKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV
EEECCCCCCCCHHHHCCCCCCCEEEECCCCCEEEECCCCCEEECCCCEEEEEHHHHHHHH
ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTE
HHHHHHHHCCCCCHHHHHHEEEECEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCC
SLSITLDAGNDWVPEGGLVYESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLG
EEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCEECCCHHHHCCCCEECCCCCEEEEEE
TDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDKACLTLSRNKLPVYSSIISPG
CCCCEEEEEEECCCEEECCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCC
KSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE
CCCCCCCEEEEEEECCCCCCCCHHHEEHHHHHCCCCCCEECHHHHEECCCCCEEEECCCC
YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENV
CCCEEEEECCCCEEECCCEEEEECCCCCEEHHHEEECCCCCCCCCEEEEECCHHHHHHHH
RSILPSVSSWSIPAMSIEEYLIGV
HHHCCCCCCCCCCCEEHHHHHCCC
>Mature Secondary Structure
MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGF
CEEEEEECCCCCHHHCCCEEEEECCCCEEECCCCCCCEEEECCCCCEEEEEEEEEECCCC
IDTGDAIYTSKITSGSTAFFGKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVL
EECCCEEEEEEECCCCEEECCCEEEHHHCCCHHHHHHCCCCHHHHCCCCCCCCCCEEEEE
QGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKEYVILEGTLEKVLDSRDPIVR
EECCCCEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCCEEE
LKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV
EEECCCCCCCCHHHHCCCCCCCEEEECCCCCEEEECCCCCEEECCCCEEEEEHHHHHHHH
ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTE
HHHHHHHHCCCCCHHHHHHEEEECEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCC
SLSITLDAGNDWVPEGGLVYESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLG
EEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCEECCCHHHHCCCCEECCCCCEEEEEE
TDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDKACLTLSRNKLPVYSSIISPG
CCCCEEEEEEECCCEEECCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCC
KSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE
CCCCCCCEEEEEEECCCCCCCCHHHEEHHHHHCCCCCCEECHHHHEECCCCCEEEECCCC
YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENV
CCCEEEEECCCCEEECCCEEEEECCCCCEEHHHEEECCCCCCCCCEEEEECCHHHHHHHH
RSILPSVSSWSIPAMSIEEYLIGV
HHHCCCCCCCCCCCEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA