| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227738
Identifier: 21227738
GI number: 21227738
Start: 1950408
End: 1951547
Strand: Reverse
Name: 21227738
Synonym: MM_1636
Alternate gene names: NA
Gene position: 1951547-1950408 (Counterclockwise)
Preceding gene: 21227739
Following gene: 21227730
Centisome position: 47.64
GC content: 43.6
Gene sequence:
>1140_bases GTGAAAATAATGATATTCATATGCGGAGAAGGGCTTGGCCACACCAGCCGCTGTCTTGCGCTGGGAAAGGAGCTTCTTGC TGCAGGGCACGAGATCGAATTCGGGGCTTACGGTTACTCCAGAGATCTGGTTGAAAAGACAGGTTATCGGATACATGAAA TACCATCGGAGATAAAACTGGTTGGAAAAGCTGGAGGATTTGACCTTTCGGGCTCAATAGAAGCGACCCTCAAAAATGCC CGGATACTTGGTGGTCCAAAGGTCCTGAAACTTATAAAAGACTTCAAACCGGATGTTGTGGTTTCGGACAGCTATTACCT GGGAACTCTTGCAGCTATGCTTCTTAATATCCCTGTGTATCTTATTATTAACCAGTCAAATATGGAGGACTTTTTCAAAA ACAGGGGCGTTCCTATAAGACTTCTCGGAGATCTGACAAAAAAATTCTACCGGGAAGTCTTTGAAAAAACCGATAAAATA ATTATTCCTGATTATCCCCTTCCATATACGGTTTGCAGAAAAAATCTGAATTTTTCCCCCGGACTTTGGGAAAAGCTGTA TTACAGCGGCCCTCTTGTAAAGGAAAAGTATGAAGAAGTGGAACAGATCCCTCTGAAAAAGCCTCATATTGTTTCCCTGA TAGGAGGTTTCGGATACAGGGAACCGATTTTCAGAAAAGTGCTCACAACTGCTGCACTCGACTCCGGAATAAATTATACG CTAATTTCTGGCCCAAGCCTCGACCCCTCAAAGTTCAAAGAAATCCCCAAAAACGTTCAGATCCTCAGGTTTGTAGGAGA TACTTTTCCATATATCAGGAGTTCAGATGCCGTAATAGCTCCAGGCGGACACAGTACAATGATGGAAGCTTTAAGTTTTG GAACTCCAATTCTTTCTTTTCCTGATGAGGGACACAGCGAACAGGAGAACAACGCTGCAGTGATTGAAGAGGAAGGTTAT GGAAGAATGCTCAGTTATTCTACCCCGCCTGAAGTCATTCTGGAATGTATAAGGGAAGTTCTTGAAGACAAGAAATACAG AGATAAAGTAAAAAGATTGCAGCGGCTTGCATCCGAACTTGACGGCCCAAAAGCAGTCAGGGAACTGCTGGAAAAAGAAG CCGGGAAAAAAGTCTCCTGA
Upstream 100 bases:
>100_bases TTGATAAAAAATGCATATAATACATATTATGTATATTACAGGGTAAAATTCAGAAAAAAGAGAACCAGGGAAGTATATTC GAGAAATGGAGGGAGCCAGG
Downstream 100 bases:
>100_bases AAAATCCTTTACCCCTCTCTCGATGCCTGCATAAAGCCTTAGCCGGTTAAACAGGCCTGAGTGAGGGTTATCAGGAAAAA AACGGGTTCTTTATGTTTGC
Product: glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MKIMIFICGEGLGHTSRCLALGKELLAAGHEIEFGAYGYSRDLVEKTGYRIHEIPSEIKLVGKAGGFDLSGSIEATLKNA RILGGPKVLKLIKDFKPDVVVSDSYYLGTLAAMLLNIPVYLIINQSNMEDFFKNRGVPIRLLGDLTKKFYREVFEKTDKI IIPDYPLPYTVCRKNLNFSPGLWEKLYYSGPLVKEKYEEVEQIPLKKPHIVSLIGGFGYREPIFRKVLTTAALDSGINYT LISGPSLDPSKFKEIPKNVQILRFVGDTFPYIRSSDAVIAPGGHSTMMEALSFGTPILSFPDEGHSEQENNAAVIEEEGY GRMLSYSTPPEVILECIREVLEDKKYRDKVKRLQRLASELDGPKAVRELLEKEAGKKVS
Sequences:
>Translated_379_residues MKIMIFICGEGLGHTSRCLALGKELLAAGHEIEFGAYGYSRDLVEKTGYRIHEIPSEIKLVGKAGGFDLSGSIEATLKNA RILGGPKVLKLIKDFKPDVVVSDSYYLGTLAAMLLNIPVYLIINQSNMEDFFKNRGVPIRLLGDLTKKFYREVFEKTDKI IIPDYPLPYTVCRKNLNFSPGLWEKLYYSGPLVKEKYEEVEQIPLKKPHIVSLIGGFGYREPIFRKVLTTAALDSGINYT LISGPSLDPSKFKEIPKNVQILRFVGDTFPYIRSSDAVIAPGGHSTMMEALSFGTPILSFPDEGHSEQENNAAVIEEEGY GRMLSYSTPPEVILECIREVLEDKKYRDKVKRLQRLASELDGPKAVRELLEKEAGKKVS >Mature_379_residues MKIMIFICGEGLGHTSRCLALGKELLAAGHEIEFGAYGYSRDLVEKTGYRIHEIPSEIKLVGKAGGFDLSGSIEATLKNA RILGGPKVLKLIKDFKPDVVVSDSYYLGTLAAMLLNIPVYLIINQSNMEDFFKNRGVPIRLLGDLTKKFYREVFEKTDKI IIPDYPLPYTVCRKNLNFSPGLWEKLYYSGPLVKEKYEEVEQIPLKKPHIVSLIGGFGYREPIFRKVLTTAALDSGINYT LISGPSLDPSKFKEIPKNVQILRFVGDTFPYIRSSDAVIAPGGHSTMMEALSFGTPILSFPDEGHSEQENNAAVIEEEGY GRMLSYSTPPEVILECIREVLEDKKYRDKVKRLQRLASELDGPKAVRELLEKEAGKKVS
Specific function: Unknown
COG id: COG1819
COG function: function code GC; Glycosyl transferases, related to UDP-glucuronosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 28 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1636_METMA (Q8PWF3)
Other databases:
- EMBL: AE008384 - RefSeq: NP_633660.1 - ProteinModelPortal: Q8PWF3 - GeneID: 1479978 - GenomeReviews: AE008384_GR - KEGG: mma:MM_1636 - NMPDR: fig|192952.1.peg.1636 - HOGENOM: HBG541230 - OMA: ISDCKYS - ProtClustDB: CLSK876508 - BioCyc: MMAZ192952:MM1636-MONOMER - InterPro: IPR004276 - InterPro: IPR007235 - InterPro: IPR002213 - PANTHER: PTHR11926
Pfam domain/function: PF04101 Glyco_tran_28_C; PF03033 Glyco_transf_28
EC number: NA
Molecular weight: Translated: 42405; Mature: 42405
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIMIFICGEGLGHTSRCLALGKELLAAGHEIEFGAYGYSRDLVEKTGYRIHEIPSEIKL CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCEEECCCHHHEE VGKAGGFDLSGSIEATLKNARILGGPKVLKLIKDFKPDVVVSDSYYLGTLAAMLLNIPVY EECCCCCCCCCCHHHHHHCCEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCEE LIINQSNMEDFFKNRGVPIRLLGDLTKKFYREVFEKTDKIIIPDYPLPYTVCRKNLNFSP EEEECCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCCCCC GLWEKLYYSGPLVKEKYEEVEQIPLKKPHIVSLIGGFGYREPIFRKVLTTAALDSGINYT CHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE LISGPSLDPSKFKEIPKNVQILRFVGDTFPYIRSSDAVIAPGGHSTMMEALSFGTPILSF EEECCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEC PDEGHSEQENNAAVIEEEGYGRMLSYSTPPEVILECIREVLEDKKYRDKVKRLQRLASEL CCCCCCCCCCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DGPKAVRELLEKEAGKKVS CCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKIMIFICGEGLGHTSRCLALGKELLAAGHEIEFGAYGYSRDLVEKTGYRIHEIPSEIKL CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCEEECCCHHHEE VGKAGGFDLSGSIEATLKNARILGGPKVLKLIKDFKPDVVVSDSYYLGTLAAMLLNIPVY EECCCCCCCCCCHHHHHHCCEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCEE LIINQSNMEDFFKNRGVPIRLLGDLTKKFYREVFEKTDKIIIPDYPLPYTVCRKNLNFSP EEEECCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCCCCC GLWEKLYYSGPLVKEKYEEVEQIPLKKPHIVSLIGGFGYREPIFRKVLTTAALDSGINYT CHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE LISGPSLDPSKFKEIPKNVQILRFVGDTFPYIRSSDAVIAPGGHSTMMEALSFGTPILSF EEECCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEC PDEGHSEQENNAAVIEEEGYGRMLSYSTPPEVILECIREVLEDKKYRDKVKRLQRLASEL CCCCCCCCCCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DGPKAVRELLEKEAGKKVS CCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12125824