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The map label for this gene is rpl10e [H]

Identifier: 21227578

GI number: 21227578

Start: 1759152

End: 1759673

Strand: Reverse

Name: rpl10e [H]

Synonym: MM_1476

Alternate gene names: 21227578

Gene position: 1759673-1759152 (Counterclockwise)

Preceding gene: 21227579

Following gene: 21227577

Centisome position: 42.96

GC content: 50.0

Gene sequence:

>522_bases
ATGGTACGAAAGCCAGGAAGTATGTACAGAAACGTGAGGCAGCGCTCATTTACCAGAAGAAAATACATGGGCGGTGTCCC
CGGAAGCCAGGTTATTCACTATGATATGGGAGACAAAGCAAACACAACTTTCCCTGTAAAAATTTCTCTGGTTGCAGAGG
AGAAATGCCAGATCAGGCACACTGCACTTGAAGCAGCCCGTATTACAGCAAACAGGCACCTTGTTGCAGACGCAGGAAAG
ATGGGCTTTTACATGAAGCTCCGTGTTTACCCCCACGAAGTACTCAGGGAAAACAAGCAGGCAACAGGCGCTGGTGCTGA
CCGTGTATCCAGTGGAATGCGCAGGGCTTTTGGAAAGAACGTCGGTACCGCAGCAAGAGTAAACTCGATGCAGAAGCTCT
TTACAGTAGCTGTTGAGAAGCAGAACTTCCCGGCTGCAAAGAAGGCTCTCTGGCACGCAGGACAGAAGCTGCCTACACCC
GTCAGAATCGTTATCGATGAAGGCGCAGAACTCGTACAGTAA

Upstream 100 bases:

>100_bases
TGAGGCAAACGTTTATAAATGGTTATAAGTGGAAAATAAGTGGAAAAAGCTTCCACGCAAGGTTTTATCAAAATCATCAC
TTTTCAGGAGAATCAGATTA

Downstream 100 bases:

>100_bases
GCGGAAAGAAGCCGTAAAATTACAAGGGAGTCTAAAGAATGTATGATTACGAAGAGCTTTTGAACCGTGCAATGTCAAAG
ATGCCGGACACAGAGACTAC

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTTFPVKISLVAEEKCQIRHTALEAARITANRHLVADAGK
MGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTP
VRIVIDEGAELVQ

Sequences:

>Translated_173_residues
MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTTFPVKISLVAEEKCQIRHTALEAARITANRHLVADAGK
MGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTP
VRIVIDEGAELVQ
>Mature_173_residues
MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTTFPVKISLVAEEKCQIRHTALEAARITANRHLVADAGK
MGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTP
VRIVIDEGAELVQ

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family [H]

Homologues:

Organism=Homo sapiens, GI18152783, Length=169, Percent_Identity=37.2781065088757, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI223890243, Length=169, Percent_Identity=37.2781065088757, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17533037, Length=160, Percent_Identity=37.5, Blast_Score=114, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6323104, Length=167, Percent_Identity=38.3233532934132, Blast_Score=117, Evalue=1e-27,
Organism=Drosophila melanogaster, GI221513696, Length=167, Percent_Identity=36.5269461077844, Blast_Score=110, Evalue=6e-25,
Organism=Drosophila melanogaster, GI221513692, Length=167, Percent_Identity=36.5269461077844, Blast_Score=110, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255 [H]

Pfam domain/function: PF00252 Ribosomal_L16 [H]

EC number: NA

Molecular weight: Translated: 19270; Mature: 19270

Theoretical pI: Translated: 11.16; Mature: 11.16

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTTFPVKISLVAEEKCQIRH
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEEEECCHHHHHH
TALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKN
HHHHHHHHHCCCEEEECCCCCCEEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
VGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTPVRIVIDEGAELVQ
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCHHHCC
>Mature Secondary Structure
MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTTFPVKISLVAEEKCQIRH
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEEEECCHHHHHH
TALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKN
HHHHHHHHHCCCEEEECCCCCCEEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
VGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTPVRIVIDEGAELVQ
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]