Click here to switch to the map view.

The map label for this gene is secD [C]

Identifier: 21227527

GI number: 21227527

Start: 1707029

End: 1708729

Strand: Direct

Name: secD [C]

Synonym: MM_1425

Alternate gene names: 21227527

Gene position: 1707029-1708729 (Clockwise)

Preceding gene: 21227526

Following gene: 21227528

Centisome position: 41.67

GC content: 47.74

Gene sequence:

>1701_bases
ATGAGCGATAAAAAAGGACTTCTTAAAAATCCGAGAGTCATTATCTTCATTCTGATCCTTCTTGGCTCTTTAATAGCCAT
CCACCCAAGCTATACACCCGGCGAAGGGATAACAACCAACCTCAACTTTGGGCTTGACCTGGAAGGCGGGTCCTGGCTCC
AGATAAAACTCCAGGGTGTACTTGTCCAGGTTGATGCAGATTCCGGAGAACTGGTCAGCGGAATTGTCGAGCCTATAATT
GGAGCTCCGATTGAGATTACAAAAAATAGCCTTGACGTCGGAGGTTCTGCCGGCGGTTCCGTCACCTTTACGACATCTGC
TCAGGTCAGTGCCTCCCAGCTTGATTCTCTGGGTACGGTAAGCGTGGACAAACTTAACGGAAACACGACTCAGGTAACTA
TCTCTGAAACCAGCAAGGAAGCACTTCTCCAGGCTTATCTTGCAAAAGCCGTTGATGCAGAAGTAGTTGCCATGGGTTCT
CAGGACGGGACCGTCTACGAAATAAGGACTGCAGTCCCTGAAGAACAGCTTGAGGCTTTACTGGAAGATGTTGGGGGATC
AATCCGCAAGAATGAAGATGGAACCTCAACTTATAAGGAAGGAGTCAGCACTGAAACCAGAGACCTCACAAGGGACATCC
TTAACGATAAACTCAACTCTATGGGCCTCAAAGATATTCCTGTAAGAACTGTAGGGGACGAATATATTCTTATTGATTTT
GCAGGCATCGACCTGGCAACTGCCAAGGAAATAGCTGAAAAGCCCGGAAAGTTTGAGATCAGAATTCAGACGACCGGAAA
TGAAACACAGCATGTCCTTTACGGCGATTCCATTCAAAGTGTGGGAATTCCGACATACCACGATGAACAGTGGCACACTC
CTTTTACCCTGAAAGAAGATGGAGCCAGGGCTCTTCAGAAAGTTGCACTGGAAACCGGGGCAGTTGATAATCCGGATGCC
CATTATCTGATAATGTACCTTGATGGAGAGGAAATCTATGGAGCTCCTTTAAGCTACTCTGCAGCAGCAAAGCTTCGTGA
AGGACCTATATACTCCTGGGAAGCTTCCACCGGGACTGATGAAAATGCCAAGGTTCAGGCTACTGCACTTCAGGTCCACC
TGCGGGCGGGAGCCCTGCCTGTCAATGTAGAGCTTGTGGGTTCAGGGCATGTGGATGCAGGTCTCGGGTCACAGTTTAAA
ATTGAAGCAGTGATCGCAGGATTTGTTTCCCTGCTGGCAGTTGCTGCAGTTGTTTACTACAGGTACAGGAGACCTGAAAT
CCTTATACCCATGGTCGGGACTTCTACCAGTGAAGTTATTATGATCCTCGGAGTAGCAGCAGCCATCGGCTGGCAGCTTG
ACCTTGCAGCAATTGCAGGTGTTATTGCCGCGATCGGGACAGGTATTGACCACCTTGTAATCATCACGGACGAGGTGCTT
TACGAGGGCAAGCTTCCGCCAACAAAGGTCTTCCTTTCGAGGATAGGAAAAGCTTTTGCAATCATTTTAGGAGCAGCTGC
CACAAATATTATCGCACTGTCTCCCCTGGTTGTAATGGGCTTTGGATCCCTGAAAGGCTTTGCAATTACCACTATCATCG
GTGTCTTTATTGGTGTGGTCTTTGCAAGACCTGTATATGGTGTAGTAATCAAGGAATTCCTTCATGCAGATGAAAATGGA
AACGGAAGCATAACAGAGTAA

Upstream 100 bases:

>100_bases
TTGCGGGACTTTTTGCAGACATGATGAATACCTGGCTGCTGAATACGGGGATTCTAAGGTGGTATTCTCTGAAACCCGAA
TTCAGAGGGAGGTATAATAG

Downstream 100 bases:

>100_bases
ATATTGAGAAAAAAGTAAAGGCACTGAAGTGACATTTAAATGCGGGAAAAATAGGTGGAATCAATGCAGGATCTCTGGAC
TCTAAAATACAGGGCAGACA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 565

Protein sequence:

>566_residues
MSDKKGLLKNPRVIIFILILLGSLIAIHPSYTPGEGITTNLNFGLDLEGGSWLQIKLQGVLVQVDADSGELVSGIVEPII
GAPIEITKNSLDVGGSAGGSVTFTTSAQVSASQLDSLGTVSVDKLNGNTTQVTISETSKEALLQAYLAKAVDAEVVAMGS
QDGTVYEIRTAVPEEQLEALLEDVGGSIRKNEDGTSTYKEGVSTETRDLTRDILNDKLNSMGLKDIPVRTVGDEYILIDF
AGIDLATAKEIAEKPGKFEIRIQTTGNETQHVLYGDSIQSVGIPTYHDEQWHTPFTLKEDGARALQKVALETGAVDNPDA
HYLIMYLDGEEIYGAPLSYSAAAKLREGPIYSWEASTGTDENAKVQATALQVHLRAGALPVNVELVGSGHVDAGLGSQFK
IEAVIAGFVSLLAVAAVVYYRYRRPEILIPMVGTSTSEVIMILGVAAAIGWQLDLAAIAGVIAAIGTGIDHLVIITDEVL
YEGKLPPTKVFLSRIGKAFAIILGAAATNIIALSPLVVMGFGSLKGFAITTIIGVFIGVVFARPVYGVVIKEFLHADENG
NGSITE

Sequences:

>Translated_566_residues
MSDKKGLLKNPRVIIFILILLGSLIAIHPSYTPGEGITTNLNFGLDLEGGSWLQIKLQGVLVQVDADSGELVSGIVEPII
GAPIEITKNSLDVGGSAGGSVTFTTSAQVSASQLDSLGTVSVDKLNGNTTQVTISETSKEALLQAYLAKAVDAEVVAMGS
QDGTVYEIRTAVPEEQLEALLEDVGGSIRKNEDGTSTYKEGVSTETRDLTRDILNDKLNSMGLKDIPVRTVGDEYILIDF
AGIDLATAKEIAEKPGKFEIRIQTTGNETQHVLYGDSIQSVGIPTYHDEQWHTPFTLKEDGARALQKVALETGAVDNPDA
HYLIMYLDGEEIYGAPLSYSAAAKLREGPIYSWEASTGTDENAKVQATALQVHLRAGALPVNVELVGSGHVDAGLGSQFK
IEAVIAGFVSLLAVAAVVYYRYRRPEILIPMVGTSTSEVIMILGVAAAIGWQLDLAAIAGVIAAIGTGIDHLVIITDEVL
YEGKLPPTKVFLSRIGKAFAIILGAAATNIIALSPLVVMGFGSLKGFAITTIIGVFIGVVFARPVYGVVIKEFLHADENG
NGSITE
>Mature_565_residues
SDKKGLLKNPRVIIFILILLGSLIAIHPSYTPGEGITTNLNFGLDLEGGSWLQIKLQGVLVQVDADSGELVSGIVEPIIG
APIEITKNSLDVGGSAGGSVTFTTSAQVSASQLDSLGTVSVDKLNGNTTQVTISETSKEALLQAYLAKAVDAEVVAMGSQ
DGTVYEIRTAVPEEQLEALLEDVGGSIRKNEDGTSTYKEGVSTETRDLTRDILNDKLNSMGLKDIPVRTVGDEYILIDFA
GIDLATAKEIAEKPGKFEIRIQTTGNETQHVLYGDSIQSVGIPTYHDEQWHTPFTLKEDGARALQKVALETGAVDNPDAH
YLIMYLDGEEIYGAPLSYSAAAKLREGPIYSWEASTGTDENAKVQATALQVHLRAGALPVNVELVGSGHVDAGLGSQFKI
EAVIAGFVSLLAVAAVVYYRYRRPEILIPMVGTSTSEVIMILGVAAAIGWQLDLAAIAGVIAAIGTGIDHLVIITDEVLY
EGKLPPTKVFLSRIGKAFAIILGAAATNIIALSPLVVMGFGSLKGFAITTIIGVFIGVVFARPVYGVVIKEFLHADENGN
GSITE

Specific function: Involved In Protein Export. [C]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 59907; Mature: 59776

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKKGLLKNPRVIIFILILLGSLIAIHPSYTPGEGITTNLNFGLDLEGGSWLQIKLQGV
CCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEECEEEEEECCCCEEEEEEEEE
LVQVDADSGELVSGIVEPIIGAPIEITKNSLDVGGSAGGSVTFTTSAQVSASQLDSLGTV
EEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCE
SVDKLNGNTTQVTISETSKEALLQAYLAKAVDAEVVAMGSQDGTVYEIRTAVPEEQLEAL
EEEEECCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCHHHHHHH
LEDVGGSIRKNEDGTSTYKEGVSTETRDLTRDILNDKLNSMGLKDIPVRTVGDEYILIDF
HHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEE
AGIDLATAKEIAEKPGKFEIRIQTTGNETQHVLYGDSIQSVGIPTYHDEQWHTPFTLKED
ECCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCC
GARALQKVALETGAVDNPDAHYLIMYLDGEEIYGAPLSYSAAAKLREGPIYSWEASTGTD
HHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHCCCEEEEECCCCCC
ENAKVQATALQVHLRAGALPVNVELVGSGHVDAGLGSQFKIEAVIAGFVSLLAVAAVVYY
CCCEEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
RYRRPEILIPMVGTSTSEVIMILGVAAAIGWQLDLAAIAGVIAAIGTGIDHLVIITDEVL
HHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHE
YEGKLPPTKVFLSRIGKAFAIILGAAATNIIALSPLVVMGFGSLKGFAITTIIGVFIGVV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEECCCCCHHHHHHHHHHHHHHH
FARPVYGVVIKEFLHADENGNGSITE
HHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SDKKGLLKNPRVIIFILILLGSLIAIHPSYTPGEGITTNLNFGLDLEGGSWLQIKLQGV
CCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEECEEEEEECCCCEEEEEEEEE
LVQVDADSGELVSGIVEPIIGAPIEITKNSLDVGGSAGGSVTFTTSAQVSASQLDSLGTV
EEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCE
SVDKLNGNTTQVTISETSKEALLQAYLAKAVDAEVVAMGSQDGTVYEIRTAVPEEQLEAL
EEEEECCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCHHHHHHH
LEDVGGSIRKNEDGTSTYKEGVSTETRDLTRDILNDKLNSMGLKDIPVRTVGDEYILIDF
HHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEE
AGIDLATAKEIAEKPGKFEIRIQTTGNETQHVLYGDSIQSVGIPTYHDEQWHTPFTLKED
ECCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCC
GARALQKVALETGAVDNPDAHYLIMYLDGEEIYGAPLSYSAAAKLREGPIYSWEASTGTD
HHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHCCCEEEEECCCCCC
ENAKVQATALQVHLRAGALPVNVELVGSGHVDAGLGSQFKIEAVIAGFVSLLAVAAVVYY
CCCEEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
RYRRPEILIPMVGTSTSEVIMILGVAAAIGWQLDLAAIAGVIAAIGTGIDHLVIITDEVL
HHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHE
YEGKLPPTKVFLSRIGKAFAIILGAAATNIIALSPLVVMGFGSLKGFAITTIIGVFIGVV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEECCCCCHHHHHHHHHHHHHHH
FARPVYGVVIKEFLHADENGNGSITE
HHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]