Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is ywjB [H]

Identifier: 21227336

GI number: 21227336

Start: 1461438

End: 1461824

Strand: Direct

Name: ywjB [H]

Synonym: MM_1234

Alternate gene names: 21227336

Gene position: 1461438-1461824 (Clockwise)

Preceding gene: 21227333

Following gene: 21227337

Centisome position: 35.68

GC content: 44.44

Gene sequence:

>387_bases
ATGGGCAGAAAGACCTATGAGCAGGTCCTGGGTTTTGGAGACTGGCCTTATGCGGACAAGAAAACTTATGTTTTTACAGG
GCAAAAAGAGCCTCTGCTCCGGGAGAAAAACGTAGAATTTGTTTCCGGGAATGTCAGAGAGTTCACGCGCCAGCTGAAAG
AGAATACTGACAAGGATATCTGGCTTGTGGGTGGCTCACAGCTTATTAAGGCGTTTCTCGAAGAAGACCTGGTGGATGAT
ATGATCGTTTTTATTGTTCCGATCATTCTTGGAGGAGGAATTCCGCTTTTTGATCGGATTGGAAAAGAGATTAAACTCAA
GATGACCAATACGGAGAGATATGAAAGCGGGCTTTTGAGAACGGAATATAACCTGAAGCCGACATAA

Upstream 100 bases:

>100_bases
CAGAGAAGACGGCAGCATAGACTGGTTAACAGAATACGACAACAATTCCGAAACCGATTACGGCTACTCCGAATTTTACG
CATCAGTCGGTACAGTTCTC

Downstream 100 bases:

>100_bases
AGAAAAAATAGCAAATCATAAAAAGAAGGTCACTCAAAGTTCTTAGTAGAATTAATCAGGCTTTCGAGTGATTTAATGGC
AATTCCAGATTATCAGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MGRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDIWLVGGSQLIKAFLEEDLVDD
MIVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLRTEYNLKPT

Sequences:

>Translated_128_residues
MGRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDIWLVGGSQLIKAFLEEDLVDD
MIVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLRTEYNLKPT
>Mature_127_residues
GRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDIWLVGGSQLIKAFLEEDLVDDM
IVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLRTEYNLKPT

Specific function: Unknown

COG id: COG0262

COG function: function code H; Dihydrofolate reductase

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yyaP [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002734 [H]

Pfam domain/function: PF01872 RibD_C [H]

EC number: NA

Molecular weight: Translated: 14793; Mature: 14662

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDI
CCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCE
WLVGGSQLIKAFLEEDLVDDMIVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLR
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEECCCHHHHCCCEE
TEYNLKPT
ECCCCCCC
>Mature Secondary Structure 
GRKTYEQVLGFGDWPYADKKTYVFTGQKEPLLREKNVEFVSGNVREFTRQLKENTDKDI
CCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCE
WLVGGSQLIKAFLEEDLVDDMIVFIVPIILGGGIPLFDRIGKEIKLKMTNTERYESGLLR
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEECCCHHHHCCCEE
TEYNLKPT
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]