| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227187
Identifier: 21227187
GI number: 21227187
Start: 1277375
End: 1278346
Strand: Direct
Name: 21227187
Synonym: MM_1085
Alternate gene names: NA
Gene position: 1277375-1278346 (Clockwise)
Preceding gene: 21227186
Following gene: 21227188
Centisome position: 31.18
GC content: 43.52
Gene sequence:
>972_bases ATGATGGATCCGCAAATAGAAAGAAAACTCATTGAAATCATGAGGGTGATTCATGAAAGTGACAAGCCCATAGGTGCCCG GGCTATAGCTGATGAACTGAACAACCGGGGCTATGATATAGGAGAGCGGGCTGTCCGTTACCACCTCAGGATCCTGGATG AGAGAGGGTTTACACGCAAGCACGGATACGCCGGGCGTACACTTACTGATCTTGGGGAAAACGAAATGAATGACGCCCTC ATTGGGGACCGTTTCGGTTTTGTAATATCCAGGATAGAAGAAATGGCATTCAGAACCACCTATAACCCTGAAACTGACAA AGGGGATGTTGTGGTAAATATCTCTTATTTTGACAAAGATGATTTCGAAACTGTTATCGAGTTAATTTCGTATACTGCTC ACGCAGGCTATATGATAAGCCCGAGAGTAAGAATTTTCGAAGAGGATTCGCTGGAAATGTCTTTGCCTCCGGGGAAAATA GGAATAGCTACCGTGTGCAGCGTCACTTTTGACGGGCTTCTTCTGAAAGCAGGAATTCCCGTAGAACCTGCTTACGGAGG GATACTCCAGATAGAAAACAAAAAACCTGCACGTTTCCTTGACCTTATTTCTTACAGCGGGACCTCTATAGACCCAATAA AGATTTTTATGAATAGGACTCCTACTTCAGTTCTTGAAGTACTTGAGAAAGGGGAAGGAAAAATACTTGCCAATATGCGT CAGATAAATTCCTCTGCTTACGAGATGACAGGAAAAATTTTGAAAAAAGCAGAAAAAGTGGGTCTTGCAGGCTGTATCAC TCTGGGAGAAATTGATGAGTATTTACTTGGAGCTCCGGTTGAAACCGGAAAGTTCGGGGCTGCGGTAGTGGGAGGAATTA ATGGGATCTGCGCACTTGAGGAAACAGGAATTGAAATAGAGACAAACCCAATTTCTACCATGCTGGATTATCAGACAATG AAAGAGATATAA
Upstream 100 bases:
>100_bases AGAGTCACCCATAAAAGGTTTATTATGTGGCTTCTGTGGTTTTATCATTATTATCCGTAAACGTTACGGAATTTATACAG GATATAACGGTGTTATAGAC
Downstream 100 bases:
>100_bases ATTTAATATAAATCAAATATAAATCTAATACAAATTTAATATAAATCTAATACAAATTTAATATAAATCTAATATAAATT TAATATAAATCAAATTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MMDPQIERKLIEIMRVIHESDKPIGARAIADELNNRGYDIGERAVRYHLRILDERGFTRKHGYAGRTLTDLGENEMNDAL IGDRFGFVISRIEEMAFRTTYNPETDKGDVVVNISYFDKDDFETVIELISYTAHAGYMISPRVRIFEEDSLEMSLPPGKI GIATVCSVTFDGLLLKAGIPVEPAYGGILQIENKKPARFLDLISYSGTSIDPIKIFMNRTPTSVLEVLEKGEGKILANMR QINSSAYEMTGKILKKAEKVGLAGCITLGEIDEYLLGAPVETGKFGAAVVGGINGICALEETGIEIETNPISTMLDYQTM KEI
Sequences:
>Translated_323_residues MMDPQIERKLIEIMRVIHESDKPIGARAIADELNNRGYDIGERAVRYHLRILDERGFTRKHGYAGRTLTDLGENEMNDAL IGDRFGFVISRIEEMAFRTTYNPETDKGDVVVNISYFDKDDFETVIELISYTAHAGYMISPRVRIFEEDSLEMSLPPGKI GIATVCSVTFDGLLLKAGIPVEPAYGGILQIENKKPARFLDLISYSGTSIDPIKIFMNRTPTSVLEVLEKGEGKILANMR QINSSAYEMTGKILKKAEKVGLAGCITLGEIDEYLLGAPVETGKFGAAVVGGINGICALEETGIEIETNPISTMLDYQTM KEI >Mature_323_residues MMDPQIERKLIEIMRVIHESDKPIGARAIADELNNRGYDIGERAVRYHLRILDERGFTRKHGYAGRTLTDLGENEMNDAL IGDRFGFVISRIEEMAFRTTYNPETDKGDVVVNISYFDKDDFETVIELISYTAHAGYMISPRVRIFEEDSLEMSLPPGKI GIATVCSVTFDGLLLKAGIPVEPAYGGILQIENKKPARFLDLISYSGTSIDPIKIFMNRTPTSVLEVLEKGEGKILANMR QINSSAYEMTGKILKKAEKVGLAGCITLGEIDEYLLGAPVETGKFGAAVVGGINGICALEETGIEIETNPISTMLDYQTM KEI
Specific function: Unknown
COG id: COG1693
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002846 - InterPro: IPR013668 - InterPro: IPR011991 [H]
Pfam domain/function: PF01995 DUF128; PF08461 HTH_12 [H]
EC number: NA
Molecular weight: Translated: 35771; Mature: 35771
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMDPQIERKLIEIMRVIHESDKPIGARAIADELNNRGYDIGERAVRYHLRILDERGFTRK CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC HGYAGRTLTDLGENEMNDALIGDRFGFVISRIEEMAFRTTYNPETDKGDVVVNISYFDKD CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC DFETVIELISYTAHAGYMISPRVRIFEEDSLEMSLPPGKIGIATVCSVTFDGLLLKAGIP HHHHHHHHHHHHHCCCEEECCCEEEEECCCCEEECCCCCCHHHHHHHHHHCCEEEECCCC VEPAYGGILQIENKKPARFLDLISYSGTSIDPIKIFMNRTPTSVLEVLEKGEGKILANMR CCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEHHHH QINSSAYEMTGKILKKAEKVGLAGCITLGEIDEYLLGAPVETGKFGAAVVGGINGICALE HHCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEEE ETGIEIETNPISTMLDYQTMKEI CCCCEEECCCHHHHHHHHHHHCC >Mature Secondary Structure MMDPQIERKLIEIMRVIHESDKPIGARAIADELNNRGYDIGERAVRYHLRILDERGFTRK CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC HGYAGRTLTDLGENEMNDALIGDRFGFVISRIEEMAFRTTYNPETDKGDVVVNISYFDKD CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC DFETVIELISYTAHAGYMISPRVRIFEEDSLEMSLPPGKIGIATVCSVTFDGLLLKAGIP HHHHHHHHHHHHHCCCEEECCCEEEEECCCCEEECCCCCCHHHHHHHHHHCCEEEECCCC VEPAYGGILQIENKKPARFLDLISYSGTSIDPIKIFMNRTPTSVLEVLEKGEGKILANMR CCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEHHHH QINSSAYEMTGKILKKAEKVGLAGCITLGEIDEYLLGAPVETGKFGAAVVGGINGICALE HHCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEEE ETGIEIETNPISTMLDYQTMKEI CCCCEEECCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]