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The map label for this gene is kaiC [H]

Identifier: 21227041

GI number: 21227041

Start: 1110367

End: 1111083

Strand: Reverse

Name: kaiC [H]

Synonym: MM_0939

Alternate gene names: 21227041

Gene position: 1111083-1110367 (Counterclockwise)

Preceding gene: 21227043

Following gene: 21227040

Centisome position: 27.12

GC content: 44.21

Gene sequence:

>717_bases
ATGGACCGAGTTAAAACAATGAAACGGATATCATCAGGAATACCTGAGCTTGACACAAGAATCGGCGGTGGATACCTGGC
GGGCAGGGTTCTCCTTATCACAGGGGATACAGGAACCGGTAAAACAACTTTTACCATTCATTTTCTGCACAGGGCATGCC
TTGATGGTAAAAAGTGTGTTCTGGTTGCAACGGAAGAACTTCCTGAGGATATTCTTGACCTATCCGAAATGCTGGGTCTC
GGGCTTACTAAATATTATGAAAATGGTCAGCTTGCTATTGAGAGGTCCTTTCAGAACCGCTCGGAAAAAGTTCAGACTTC
CAAATTCGGTTTCACTCCCGAAGGCCTTGAAATTGAACTGCCCACCCTTTCTGATTATGTACCTGAAGGAACAGATGTCG
TGGTTATTGACAATATAGGGGTTTTCACACTAAGGCTCTCTATACAGGATTTCAGGGACCAGTTTGACGCATTGAATTTT
ATCCTGAGCACCAGAGGTGACTGCACGGCAATGTTTGTCATGGACGACACGGCTTGCAAGATGACTCACAACCTTGCCGA
ATATTCTGTAAGCGGTTCTCTCCGGCTTATGGTAGACGAAAACCCATATACGGGAAACATTGAACGCTACATAAGAATTC
CTAAAATGAGACGGACATGCCTCAGTTTAAACCCTATTAGATTTGAAATTACCTCATCCGGGATTAAACTCCTTTGA

Upstream 100 bases:

>100_bases
GTACATTTTATATAAGAGCTCTCCTTATACTCTATAAATAAAATTCAATTCTAGCCCTCTTCTCTGTACTGCAACTCAGC
GGGTTAAAGATTATGATAAA

Downstream 100 bases:

>100_bases
GCCTCTGATTAATTATAATTCTATTCTCTTTTTCAAATAATTTTTCTTTTCAAATAATTTTTCTTAAAAATCCTTTTTAT
ATTTTCCTGTATGGATATTA

Product: putative flagella-like protein H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDRVKTMKRISSGIPELDTRIGGGYLAGRVLLITGDTGTGKTTFTIHFLHRACLDGKKCVLVATEELPEDILDLSEMLGL
GLTKYYENGQLAIERSFQNRSEKVQTSKFGFTPEGLEIELPTLSDYVPEGTDVVVIDNIGVFTLRLSIQDFRDQFDALNF
ILSTRGDCTAMFVMDDTACKMTHNLAEYSVSGSLRLMVDENPYTGNIERYIRIPKMRRTCLSLNPIRFEITSSGIKLL

Sequences:

>Translated_238_residues
MDRVKTMKRISSGIPELDTRIGGGYLAGRVLLITGDTGTGKTTFTIHFLHRACLDGKKCVLVATEELPEDILDLSEMLGL
GLTKYYENGQLAIERSFQNRSEKVQTSKFGFTPEGLEIELPTLSDYVPEGTDVVVIDNIGVFTLRLSIQDFRDQFDALNF
ILSTRGDCTAMFVMDDTACKMTHNLAEYSVSGSLRLMVDENPYTGNIERYIRIPKMRRTCLSLNPIRFEITSSGIKLL
>Mature_238_residues
MDRVKTMKRISSGIPELDTRIGGGYLAGRVLLITGDTGTGKTTFTIHFLHRACLDGKKCVLVATEELPEDILDLSEMLGL
GLTKYYENGQLAIERSFQNRSEKVQTSKFGFTPEGLEIELPTLSDYVPEGTDVVVIDNIGVFTLRLSIQDFRDQFDALNF
ILSTRGDCTAMFVMDDTACKMTHNLAEYSVSGSLRLMVDENPYTGNIERYIRIPKMRRTCLSLNPIRFEITSSGIKLL

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 26637; Mature: 26637

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS51146 KAIC ; PS00675 SIGMA54_INTERACT_1 ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRVKTMKRISSGIPELDTRIGGGYLAGRVLLITGDTGTGKTTFTIHFLHRACLDGKKCV
CCHHHHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEHHHHHCCCCEEE
LVATEELPEDILDLSEMLGLGLTKYYENGQLAIERSFQNRSEKVQTSKFGFTPEGLEIEL
EEECHHCCHHHHHHHHHHCCCCEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCEEEC
PTLSDYVPEGTDVVVIDNIGVFTLRLSIQDFRDQFDALNFILSTRGDCTAMFVMDDTACK
CCHHHCCCCCCCEEEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
MTHNLAEYSVSGSLRLMVDENPYTGNIERYIRIPKMRRTCLSLNPIRFEITSSGIKLL
HHHHHHHEECCCEEEEEECCCCCCCCHHHEEECCHHHHHHCCCCCEEEEEECCCEEEC
>Mature Secondary Structure
MDRVKTMKRISSGIPELDTRIGGGYLAGRVLLITGDTGTGKTTFTIHFLHRACLDGKKCV
CCHHHHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEHHHHHCCCCEEE
LVATEELPEDILDLSEMLGLGLTKYYENGQLAIERSFQNRSEKVQTSKFGFTPEGLEIEL
EEECHHCCHHHHHHHHHHCCCCEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCEEEC
PTLSDYVPEGTDVVVIDNIGVFTLRLSIQDFRDQFDALNFILSTRGDCTAMFVMDDTACK
CCHHHCCCCCCCEEEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
MTHNLAEYSVSGSLRLMVDENPYTGNIERYIRIPKMRRTCLSLNPIRFEITSSGIKLL
HHHHHHHEECCCEEEEEECCCCCCCCHHHEEECCHHHHHHCCCCCEEEEEECCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12477935 [H]