| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226996
Identifier: 21226996
GI number: 21226996
Start: 1055022
End: 1055327
Strand: Direct
Name: 21226996
Synonym: MM_0894
Alternate gene names: NA
Gene position: 1055022-1055327 (Clockwise)
Preceding gene: 21226995
Following gene: 21227000
Centisome position: 25.76
GC content: 46.08
Gene sequence:
>306_bases ATGAGCAAAAACTCAAATATGAAATTCCTTTACGCAGGAATCGCAATTGCGCTTTTGCTTTCCATCCTTGCTCCTTTCCT TGCCTCTTCCGACCCCGACGGGCTGGAAAGTGCAGCAGGAGGAGTAATTGAAGAGTCGAAAATGTCAGAACTCGAAGAAA CGGAACCCGCAGTAAGTTCTCCAATGTCTGACTACGCTATTGAAGGCATGGGAAAGAGCGGAGAGGTTATGGCAATTGCA ATCGGGACTGTAGCAGTGCTGGCTATCAGTTTCGGGTTTGGAAAGATTTTCAATAAAAAAGCCTGA
Upstream 100 bases:
>100_bases TCACTTCGGTCGTGATCACGGCGATTGCAAAATCCCGTCCTGACCTGCTTGAAGGCGGGTACACTGCCAGACCTGAGAAA TCCAAGACGGAGGCTCATGC
Downstream 100 bases:
>100_bases GCAAAATTCCTTTCTCTGTTTTGAAACGCCGCTTCTTCCAGAAAAAGGAAGAAACGGCTACTCTTAAATTACCACAGTGC ATGCTCTGGAATGAGCATTC
Product: cobalt transport protein CbiN
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 101; Mature: 100
Protein sequence:
>101_residues MSKNSNMKFLYAGIAIALLLSILAPFLASSDPDGLESAAGGVIEESKMSELEETEPAVSSPMSDYAIEGMGKSGEVMAIA IGTVAVLAISFGFGKIFNKKA
Sequences:
>Translated_101_residues MSKNSNMKFLYAGIAIALLLSILAPFLASSDPDGLESAAGGVIEESKMSELEETEPAVSSPMSDYAIEGMGKSGEVMAIA IGTVAVLAISFGFGKIFNKKA >Mature_100_residues SKNSNMKFLYAGIAIALLLSILAPFLASSDPDGLESAAGGVIEESKMSELEETEPAVSSPMSDYAIEGMGKSGEVMAIAI GTVAVLAISFGFGKIFNKKA
Specific function: Unknown
COG id: COG0310
COG function: function code P; ABC-type Co2+ transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ1570 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10435; Mature: 10304
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.9 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKNSNMKFLYAGIAIALLLSILAPFLASSDPDGLESAAGGVIEESKMSELEETEPAVSS CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHCCCHHCC PMSDYAIEGMGKSGEVMAIAIGTVAVLAISFGFGKIFNKKA CCCHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SKNSNMKFLYAGIAIALLLSILAPFLASSDPDGLESAAGGVIEESKMSELEETEPAVSS CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHCCCHHCC PMSDYAIEGMGKSGEVMAIAIGTVAVLAISFGFGKIFNKKA CCCHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]