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The map label for this gene is ydeM [C]

Identifier: 212224763

GI number: 212224763

Start: 1472958

End: 1473863

Strand: Reverse

Name: ydeM [C]

Synonym: TON_1612

Alternate gene names: 212224763

Gene position: 1473863-1472958 (Counterclockwise)

Preceding gene: 212224766

Following gene: 212224762

Centisome position: 79.77

GC content: 44.92

Gene sequence:

>906_bases
ATGGATATAGATGATACAAATAGAGATTTAAACTGTATAAAGTCTGAAATAGCTGGTTTTCCAAAGTTTTTCGTGATACA
CGAGAGCTCGGGATACGTGGTGGAGGTAGAGCCCGAAACCTACTCCGGCCTTCAGAAAATCAAAGAAGGGGAAGGGAACA
AACTAACCTCGGAAGAGCGAGCAAAACTTAGGGAACTTCAGAACTATTTGAACCAGCTCCCGCCCCTAAACCTTGAATAC
AACGAAGATTACGGTTTCCTCCTTGGGGGGAGCATCAACGTTTCCCAGGCCTGTAATTTCTCCTGCGTTTACTGCTACGC
AAATAAAGGAACCTATACCCTCGAAAAGCCAAAACTTATGGATAAAGAGACAATCCGAAAGGCCATAGACTTCCTATTTG
AAAAATCTCCCTATGGAGTGAGCATAGTCTTCTTTGGAGGGGAACCCCTACTAAACTTTCCTGCAATAAAAGAAGGCGTC
CTCTATGCAGAGCAGAAGGCCAGGGAAACAAAGAAACCCGTCTTTTTCAACGTTACAACCAACGGATACCTTCTCACCCC
AGAGGTGGCTGAATTCGTACTAAACCACCCCTTCAACGTGATAGTGAGCATGGATGGACCTAAAGAAATCCACGACCATA
ACAGACCCTTTGCGGACAACTCCCCCACCTACAATGTTGTAGCTAAAAACCTCAAGCACCTCGTTGAAGAAGCTAAAAAA
AGAGGAAAGCTCCACAAGATTTCTGTGAGAGCAACTGTTCTCCCGGAACAGCTTAATAGAGTTTATGACATCTACCACCA
CATCAAGACAGAATTTGGAGTCCTCAACGTCGGGGTTGAATTAGCCACCCTCTCGGACAGCGTAGTAACCAAGGGACACA
TTGATACTTACCTGGAAAGGAGATAA

Upstream 100 bases:

>100_bases
GGCTGTTATTATAACGAGGTTGTTGCCATGTTTTGCAGAACAAAAAAAGTCAAAATTTTTTAAATTATTTTATGCATTTA
ACCTATTGAGGATGGTATTA

Downstream 100 bases:

>100_bases
CCTGAATTCTTCTAACATTTTTATTTTTGTCTGCGCTGTAATCGGGAGACAGGTGATGGAATATGGATATAGTAAAGCGC
TATACCTTACTTTACATCTT

Product: Arylsulfatase regulator (Fe-S oxidoreductase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDIDDTNRDLNCIKSEIAGFPKFFVIHESSGYVVEVEPETYSGLQKIKEGEGNKLTSEERAKLRELQNYLNQLPPLNLEY
NEDYGFLLGGSINVSQACNFSCVYCYANKGTYTLEKPKLMDKETIRKAIDFLFEKSPYGVSIVFFGGEPLLNFPAIKEGV
LYAEQKARETKKPVFFNVTTNGYLLTPEVAEFVLNHPFNVIVSMDGPKEIHDHNRPFADNSPTYNVVAKNLKHLVEEAKK
RGKLHKISVRATVLPEQLNRVYDIYHHIKTEFGVLNVGVELATLSDSVVTKGHIDTYLERR

Sequences:

>Translated_301_residues
MDIDDTNRDLNCIKSEIAGFPKFFVIHESSGYVVEVEPETYSGLQKIKEGEGNKLTSEERAKLRELQNYLNQLPPLNLEY
NEDYGFLLGGSINVSQACNFSCVYCYANKGTYTLEKPKLMDKETIRKAIDFLFEKSPYGVSIVFFGGEPLLNFPAIKEGV
LYAEQKARETKKPVFFNVTTNGYLLTPEVAEFVLNHPFNVIVSMDGPKEIHDHNRPFADNSPTYNVVAKNLKHLVEEAKK
RGKLHKISVRATVLPEQLNRVYDIYHHIKTEFGVLNVGVELATLSDSVVTKGHIDTYLERR
>Mature_301_residues
MDIDDTNRDLNCIKSEIAGFPKFFVIHESSGYVVEVEPETYSGLQKIKEGEGNKLTSEERAKLRELQNYLNQLPPLNLEY
NEDYGFLLGGSINVSQACNFSCVYCYANKGTYTLEKPKLMDKETIRKAIDFLFEKSPYGVSIVFFGGEPLLNFPAIKEGV
LYAEQKARETKKPVFFNVTTNGYLLTPEVAEFVLNHPFNVIVSMDGPKEIHDHNRPFADNSPTYNVVAKNLKHLVEEAKK
RGKLHKISVRATVLPEQLNRVYDIYHHIKTEFGVLNVGVELATLSDSVVTKGHIDTYLERR

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=179, Percent_Identity=28.4916201117318, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34189; Mature: 34189

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIDDTNRDLNCIKSEIAGFPKFFVIHESSGYVVEVEPETYSGLQKIKEGEGNKLTSEER
CCCCCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHH
AKLRELQNYLNQLPPLNLEYNEDYGFLLGGSINVSQACNFSCVYCYANKGTYTLEKPKLM
HHHHHHHHHHHHCCCCCEEECCCCCEEECCCCCHHHCCCCEEEEEEECCCEEEECCCCCC
DKETIRKAIDFLFEKSPYGVSIVFFGGEPLLNFPAIKEGVLYAEQKARETKKPVFFNVTT
CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
NGYLLTPEVAEFVLNHPFNVIVSMDGPKEIHDHNRPFADNSPTYNVVAKNLKHLVEEAKK
CCEEECHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RGKLHKISVRATVLPEQLNRVYDIYHHIKTEFGVLNVGVELATLSDSVVTKGHIDTYLER
CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCEEECCEEEEECCCCCEECCCHHHHHCC
R
C
>Mature Secondary Structure
MDIDDTNRDLNCIKSEIAGFPKFFVIHESSGYVVEVEPETYSGLQKIKEGEGNKLTSEER
CCCCCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHH
AKLRELQNYLNQLPPLNLEYNEDYGFLLGGSINVSQACNFSCVYCYANKGTYTLEKPKLM
HHHHHHHHHHHHCCCCCEEECCCCCEEECCCCCHHHCCCCEEEEEEECCCEEEECCCCCC
DKETIRKAIDFLFEKSPYGVSIVFFGGEPLLNFPAIKEGVLYAEQKARETKKPVFFNVTT
CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
NGYLLTPEVAEFVLNHPFNVIVSMDGPKEIHDHNRPFADNSPTYNVVAKNLKHLVEEAKK
CCEEECHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RGKLHKISVRATVLPEQLNRVYDIYHHIKTEFGVLNVGVELATLSDSVVTKGHIDTYLER
CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCEEECCEEEEECCCCCEECCCHHHHHCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]