| Definition | Thermococcus onnurineus NA1, complete genome. |
|---|---|
| Accession | NC_011529 |
| Length | 1,847,607 |
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The map label for this gene is 212224699
Identifier: 212224699
GI number: 212224699
Start: 1422170
End: 1422832
Strand: Reverse
Name: 212224699
Synonym: TON_1548
Alternate gene names: NA
Gene position: 1422832-1422170 (Counterclockwise)
Preceding gene: 212224701
Following gene: 212224698
Centisome position: 77.01
GC content: 52.04
Gene sequence:
>663_bases ATGAAGCACCGTAAAGTGTCCCTTGCACTCTTCGCACTCTCGCTCTTTCCGGCCTTCGCCGTTAGCTACGACTTTGGAAA GCTTCCCTCAAAGCTCCAAGAGGAAGCGTTGAGTGCAGTAATAACCGCCGACGTCCTCTCCAATTGGGTTCCGCCGTTTA TCAAATACCTCCTGGCCCCGTTTGTTTTAATATACCTTCTATTCATCTTCGGCTCCGAGTTCGAGAGTGGAAGAGCAGCG TTGATGCTCAGCAAGTCCCTCACGAAGAGGCGCTACTTTATGGGATGGATAACGCAAGGTGTAGAGCTTGCTTTAATCCC TGCCCTTGGCATGGTCCTCTCCGGAAGTCTGGCGATGCTCTACTACGGCCTCGATCCTGAAGACTACATATTGGGCGCAA TCGGCCTTTCGGTAGCTCTCATCGGTGTTGTGGGAGTGGCCCTCCTAATTATTCCGGCCGTGAGAAGCGGGGACACCGGC GTTTTCCTTGGGATTGGAGCTTTTATAACCCTCCTTCTGGCCTCAAATCTTGACTTGGGCATTTCGCTTGACTTTCTACC CTTCAACTATCTCCAAAATGCCCTCTCATTTACCAGAACTGGAATAGACACCTCCCCGGGGCAGTCATCACCATCCTGTC CTTCTCCCTGCTCTCCACTCTAG
Upstream 100 bases:
>100_bases TCGTTCCCTACTTTGCCCTTGGCTCCCTGTTTCCTTTTGTCGGCTTCGTGCTCTCCCATCAAGTTACAAGGCTTGAACTA AACTCGTGGAGGGCTGCGGG
Downstream 100 bases:
>100_bases TGGGTTCCGAGATTTTCCGGAGAACGGAGCTTAGGAACGCTCGACTCAACGTCTCCCTGGCAGCCCCCGTCCCGTCCCGC GGCATCACCGGTCTCTTCCT
Product: ABC-type transport system, permease component, N-terminus
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MKHRKVSLALFALSLFPAFAVSYDFGKLPSKLQEEALSAVITADVLSNWVPPFIKYLLAPFVLIYLLFIFGSEFESGRAA LMLSKSLTKRRYFMGWITQGVELALIPALGMVLSGSLAMLYYGLDPEDYILGAIGLSVALIGVVGVALLIIPAVRSGDTG VFLGIGAFITLLLASNLDLGISLDFLPFNYLQNALSFTRTGIDTSPGQSSPSCPSPCSPL
Sequences:
>Translated_220_residues MKHRKVSLALFALSLFPAFAVSYDFGKLPSKLQEEALSAVITADVLSNWVPPFIKYLLAPFVLIYLLFIFGSEFESGRAA LMLSKSLTKRRYFMGWITQGVELALIPALGMVLSGSLAMLYYGLDPEDYILGAIGLSVALIGVVGVALLIIPAVRSGDTG VFLGIGAFITLLLASNLDLGISLDFLPFNYLQNALSFTRTGIDTSPGQSSPSCPSPCSPL >Mature_220_residues MKHRKVSLALFALSLFPAFAVSYDFGKLPSKLQEEALSAVITADVLSNWVPPFIKYLLAPFVLIYLLFIFGSEFESGRAA LMLSKSLTKRRYFMGWITQGVELALIPALGMVLSGSLAMLYYGLDPEDYILGAIGLSVALIGVVGVALLIIPAVRSGDTG VFLGIGAFITLLLASNLDLGISLDFLPFNYLQNALSFTRTGIDTSPGQSSPSCPSPCSPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23577; Mature: 23577
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHRKVSLALFALSLFPAFAVSYDFGKLPSKLQEEALSAVITADVLSNWVPPFIKYLLAP CCCCHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH FVLIYLLFIFGSEFESGRAALMLSKSLTKRRYFMGWITQGVELALIPALGMVLSGSLAML HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEE YYGLDPEDYILGAIGLSVALIGVVGVALLIIPAVRSGDTGVFLGIGAFITLLLASNLDLG EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCC ISLDFLPFNYLQNALSFTRTGIDTSPGQSSPSCPSPCSPL EEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKHRKVSLALFALSLFPAFAVSYDFGKLPSKLQEEALSAVITADVLSNWVPPFIKYLLAP CCCCHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH FVLIYLLFIFGSEFESGRAALMLSKSLTKRRYFMGWITQGVELALIPALGMVLSGSLAML HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEE YYGLDPEDYILGAIGLSVALIGVVGVALLIIPAVRSGDTGVFLGIGAFITLLLASNLDLG EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCC ISLDFLPFNYLQNALSFTRTGIDTSPGQSSPSCPSPCSPL EEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA