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The map label for this gene is 212224387

Identifier: 212224387

GI number: 212224387

Start: 1128809

End: 1129120

Strand: Reverse

Name: 212224387

Synonym: TON_1238

Alternate gene names: NA

Gene position: 1129120-1128809 (Counterclockwise)

Preceding gene: 212224391

Following gene: 212224386

Centisome position: 61.11

GC content: 53.53

Gene sequence:

>312_bases
ATGAAGCGCCTGGGCAAGGTTTCTCACTATGCAAAGCAGGGGTTCTTAATTCTGCGTACAGACTGGGTTCCATCGCTCAA
TGAACCGGTTGTGGATAAGAATCTCACCATGGTCGGGGTAGTGAAGGATGTTTTCGGGCCGGTTAAAAGGCCATACGTGG
CTGTTAAACCGCGTGTCAAGAACCCTGGGGAGTACGTTGGGGCTTTGCTCTACGTCGATACCAAGCGCAAAAAGACCAAG
CCGAATCACGGGAAGAAGCGAAGAGCTAAGGGCGGAACGGGTAGACGCCCTGCCCCCAGAAAAAGGGGGTGA

Upstream 100 bases:

>100_bases
TAGAGAGCGCCTTAAATAAAAACCTTTTGGAAATTCACCGAAAAGTTTATAAGTGTAAAAGCGAAAAGCTTAAAAGGATA
TATCCTTTTGGGGTGGGGCT

Downstream 100 bases:

>100_bases
GAACTTTTGGCTGATAAGAACATCTGTCCGGTTTGTGGTTCCGATAAGCTGTTCTACGATCCGCGGAGGGGCGAGATCGT
CTGTTCTGTCTGCGGTTATG

Product: H/ACA RNA-protein complex component Gar1

Products: NA

Alternate protein names: Gar1-Like Small Nucleolar Rnp

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MKRLGKVSHYAKQGFLILRTDWVPSLNEPVVDKNLTMVGVVKDVFGPVKRPYVAVKPRVKNPGEYVGALLYVDTKRKKTK
PNHGKKRRAKGGTGRRPAPRKRG

Sequences:

>Translated_103_residues
MKRLGKVSHYAKQGFLILRTDWVPSLNEPVVDKNLTMVGVVKDVFGPVKRPYVAVKPRVKNPGEYVGALLYVDTKRKKTK
PNHGKKRRAKGGTGRRPAPRKRG
>Mature_103_residues
MKRLGKVSHYAKQGFLILRTDWVPSLNEPVVDKNLTMVGVVKDVFGPVKRPYVAVKPRVKNPGEYVGALLYVDTKRKKTK
PNHGKKRRAKGGTGRRPAPRKRG

Specific function: Unknown

COG id: COG3277

COG function: function code J; RNA-binding protein involved in rRNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11590; Mature: 11590

Theoretical pI: Translated: 11.76; Mature: 11.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLGKVSHYAKQGFLILRTDWVPSLNEPVVDKNLTMVGVVKDVFGPVKRPYVAVKPRVK
CCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC
NPGEYVGALLYVDTKRKKTKPNHGKKRRAKGGTGRRPAPRKRG
CCHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRLGKVSHYAKQGFLILRTDWVPSLNEPVVDKNLTMVGVVKDVFGPVKRPYVAVKPRVK
CCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC
NPGEYVGALLYVDTKRKKTKPNHGKKRRAKGGTGRRPAPRKRG
CCHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA