| Definition | Thermococcus onnurineus NA1, complete genome. |
|---|---|
| Accession | NC_011529 |
| Length | 1,847,607 |
Click here to switch to the map view.
The map label for this gene is 212223886
Identifier: 212223886
GI number: 212223886
Start: 686911
End: 687783
Strand: Reverse
Name: 212223886
Synonym: TON_0737
Alternate gene names: NA
Gene position: 687783-686911 (Counterclockwise)
Preceding gene: 212223887
Following gene: 212223874
Centisome position: 37.23
GC content: 53.49
Gene sequence:
>873_bases ATGGACGAGCTGAGAAGGGCCGTTTTGAACGTTATCAGAAAGATCCGCTCTCACAGAGAGCTCTACGTGAAGAACGAGGA GGCTGTGAAGCAGCACCTAATAGGCGAGATTTTTCAGGCCCTCGGGTGGGACTGGAACAACCCTGAGGAGGTTCGTCCAG AGGAGAGAACCGAGGATGGGAGGGCTGACTACGCGCTCATTCTGAACGGGGGGGTCTTCGCCTACGTCGAAGCTAAGAAC CTTGGTGTGAACATCCTCAAGCGCGAGGAGCCTCTGAGGCAGCTTGCCCGCTACTGCTTCAACTCAGGTGTTCGCTACGG CATTCTCACCAACGGTGCGATGTGGATAGCGGTCAAGGCATTTGAAGAAGGCTCTAGGCTGAGGGACAGGGTTCTGCTTA CGGTCAACGTTGAGGAGGAACCCGTCGAGAAGGCCGTTCTCAAGCTGTCTATCCTGTCGAAGTCCCGCATAGATGACATC GAGAGACTCTCGTCTCTTCTCAGGGCGATGGAGTTGAGCTTCATAGGGCTGAAAAGAGAAGGCTACCCTGAGAAGATGCT CATCGAGTATCTGACCTCAAAAGAGGGATCAAATACCGTTCCTGTGGAGGATCTGACAGGCGACGAAACGCCCAAAGCAG CTTACGTCTATGACAGTGGCTGGAAACTCCTTCCATTGCCGGAGAAGAGCATCAAAGGTGTTCTGCTTGCGGTTCTTCTC TACATGGAGCGCAGGGCTCAAGGCTACCAGCGTGAGGAAATAAGGAAGGCCTACGAGCACCTCAGGACGATGCCCCTGAA CCCAAAAACTGCTCTAGAGATACTGAGAAAGCTCGAGGAGGAAGAAAAGCTCAGAATTTCCGTGGAGCTCTAA
Upstream 100 bases:
>100_bases GTAATCGACGTTGATGGGGCCCTCACCAAGCTCAAGCTTGGCTCATTTAGGGGTTTTGAGGCTGGAAGCAGGAAGTACAT CATCGAGGTCGGTGGGTGAT
Downstream 100 bases:
>100_bases ACGACCTTCCAGAGCTCGTCGCTCTCTGGCCTCTCCAGAGGCTTTTCCTTTCCGTTATCAACCATTACTCTCGATTCTTT GTCTTCTAGGAACTCCCCGA
Product: restriction endonuclease
Products: NA
Alternate protein names: Type I Restriction R Protein N Terminal Domain Protein
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDGRADYALILNGGVFAYVEAKN LGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKAFEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDI ERLSSLLRAMELSFIGLKREGYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL
Sequences:
>Translated_290_residues MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDGRADYALILNGGVFAYVEAKN LGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKAFEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDI ERLSSLLRAMELSFIGLKREGYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL >Mature_290_residues MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDGRADYALILNGGVFAYVEAKN LGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKAFEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDI ERLSSLLRAMELSFIGLKREGYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL
Specific function: Unknown
COG id: COG2810
COG function: function code V; Predicted type IV restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33500; Mature: 33500
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDG CCHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC RADYALILNGGVFAYVEAKNLGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKA CCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEE FEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDIERLSSLLRAMELSFIGLKRE HHCCCHHHCEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEECCC GYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHH YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEC >Mature Secondary Structure MDELRRAVLNVIRKIRSHRELYVKNEEAVKQHLIGEIFQALGWDWNNPEEVRPEERTEDG CCHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC RADYALILNGGVFAYVEAKNLGVNILKREEPLRQLARYCFNSGVRYGILTNGAMWIAVKA CCCEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEE FEEGSRLRDRVLLTVNVEEEPVEKAVLKLSILSKSRIDDIERLSSLLRAMELSFIGLKRE HHCCCHHHCEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEEECCC GYPEKMLIEYLTSKEGSNTVPVEDLTGDETPKAAYVYDSGWKLLPLPEKSIKGVLLAVLL CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHH YMERRAQGYQREEIRKAYEHLRTMPLNPKTALEILRKLEEEEKLRISVEL HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA